GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000565-TA|BGIBMGA000565-PA|IPR003198|Amidinotransferase
         (263 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z78415-4|CAB01673.2|  281|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF039710-8|AAB96686.2|  312|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.10 protein.
          Length = 337

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 78  RNEAEARNFKILKEVLKKDLRQSIVEQDESDAVICGSDVLFTGREFFVGICKTTNEAGAS 137
           +N  + ++ ++ K +L K  R  IVE+    A+ C         E+++  C+T  + G S
Sbjct: 220 KNSDQQQHEELRKRLLTKGYRADIVEK----ALRCLPKSRLVHIEYYMKACRTVEKTGKS 275

Query: 138 LLAETFP 144
            + ET P
Sbjct: 276 SIDETLP 282


>Z78415-4|CAB01673.2|  281|Caenorhabditis elegans Hypothetical
           protein C17G1.5 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 180 AKELLKRMEREANFSY-QTLSVPEDEAANCLYVNGTLVHRAIEEIPEAFK 228
           AK L +  +++ ++ Y QTLS+ +  A N   V G   H     +PE  K
Sbjct: 176 AKNLTRLKKQKCSYKYCQTLSILDRNAGNSFVVRGCAEHFGAINVPELEK 225


>AF039710-8|AAB96686.2|  312|Caenorhabditis elegans Hypothetical
           protein C46E10.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 121 REFFVGICKTTNEAGASLLAETFPEFPCTPIKMSKGAEHLKKYITVAGDDVLCVGASQEA 180
           +E+      TT     + +AET P  P  P K +  A   K+ +T  G D LC      A
Sbjct: 236 KEYAADETTTTTPEPTTTVAETTPA-PIPPQKPTPAALGQKEDLTGCGTDRLCFDEEMNA 294

Query: 181 KELLKRM 187
               K++
Sbjct: 295 SASFKKV 301


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,974,413
Number of Sequences: 27539
Number of extensions: 228007
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 3
length of query: 263
length of database: 12,573,161
effective HSP length: 80
effective length of query: 183
effective length of database: 10,370,041
effective search space: 1897717503
effective search space used: 1897717503
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)