BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000564-TA|BGIBMGA000564-PA|IPR001382|Glycoside hydrolase, family 47 (533 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 272 3e-73 SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.) 269 4e-72 SB_7286| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0.4) 113 4e-25 SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 3e-12 SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24) 58 2e-08 SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.3 SB_54656| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.3 SB_840| Best HMM Match : Ornatin (HMM E-Value=3.4) 30 4.1 SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 30 4.1 SB_4341| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1 SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4 >SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) Length = 758 Score = 272 bits (668), Expect = 3e-73 Identities = 146/315 (46%), Positives = 198/315 (62%), Gaps = 13/315 (4%) Query: 113 KPVSGMASDWFSLGLTIVDSLDTAYIMGLTDVFEEGKQWIKEELIFTKNKDVNFFEVTIR 172 K VS + + WF L L + MG V E G++ I T++ +F E++ Sbjct: 455 KAVSTINAFWFLL-LRRTTPIKWYDYMGFEGVVESGRE------INTRS---SFTEISAL 504 Query: 173 ILGGLLTNHYFTQDQLFLD-KAIDLGDRLMAAFSSPSGIPYSDVNLGARTAHAPEWSHYS 231 L + + L L + ++LGDRL+ F+S SGIP+SDVNL R H P W S Sbjct: 505 ALCQKQKRRICSNEGLMLKTRGVELGDRLLPCFNSQSGIPFSDVNLMTRQVHPPRWGPDS 564 Query: 232 TTAEVTTVQLEFRQLSRASGNPIFEEAAAAVSEKIHQLPKKHGLVPIFINPNTGHFLPHA 291 + +EV+T+QLEFR LS +GN +++A V +H LPKK+GLVPIF+N NTG F P A Sbjct: 565 SVSEVSTIQLEFRDLSYVTGNDKYKQAVDKVMRHLHSLPKKNGLVPIFVNANTGQFRPGA 624 Query: 292 TITLGARGDSYYEYLLKQWLQTGKTINYLLDDYLTGIEGVREFLAKRSSPNKRLFIGELS 351 TITLGARGDSYYEYLLKQWLQTGK ++L +D+ + GV LA+RS PNK L++GEL Sbjct: 625 TITLGARGDSYYEYLLKQWLQTGKKEDWLKEDFTNSMNGVTSLLARRSHPNKLLYVGELL 684 Query: 352 AGSEAFNPKMDHLTCFLPGTLALGHLNGLPDWHMTMAEELLYTCYLTYAAHPTFLAPEIT 411 G+ +F+PKMDHL CFLPGT+AL NGL ++ A++++ TCY YA P+ L+PEI Sbjct: 685 HGN-SFSPKMDHLVCFLPGTMALAAHNGLDPKYLEFAKDMMETCYQMYARMPSRLSPEIA 743 Query: 412 HFNL-ASTTDDMYTK 425 +FN T+D+ K Sbjct: 744 YFNQNPPATEDIIVK 758 Score = 153 bits (371), Expect = 3e-37 Identities = 62/110 (56%), Positives = 85/110 (77%) Query: 85 NDRQRALVESFRHAWRGYKEHAWGHDNLKPVSGMASDWFSLGLTIVDSLDTAYIMGLTDV 144 N RQ+A++E+FRHAW+GYK+ AWGHD LKP+S S+WF++GLTI+DSLDT ++ L D Sbjct: 348 NSRQKAVIEAFRHAWKGYKQFAWGHDELKPISKSFSEWFNIGLTIIDSLDTMLLLNLKDE 407 Query: 145 FEEGKQWIKEELIFTKNKDVNFFEVTIRILGGLLTNHYFTQDQLFLDKAI 194 F E + W+ L F KN DVN FEVTIR+LGGLL+ ++ + D +FL+KA+ Sbjct: 408 FREARDWVANSLSFDKNVDVNLFEVTIRVLGGLLSAYHLSNDDIFLNKAV 457 >SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 555 Score = 269 bits (659), Expect = 4e-72 Identities = 150/437 (34%), Positives = 240/437 (54%), Gaps = 21/437 (4%) Query: 39 IERGNEDSVQEKLRNTSLNAKPALDNTVQIKYDPTVYERPVFTGPKND---RQRA--LVE 93 I+ E ++E+ R K L++ + K TV + G D RQR + + Sbjct: 118 IKEEKEKFIEEQKRQKEAAKKAELESLLATKQTGTV---EIIDGAPPDPLTRQRRDFVKK 174 Query: 94 SFRHAWRGYKEHAWGHDNLKPVS--GMASDWF---SLGLTIVDSLDTAYIMGLTDVFEEG 148 +HAW GY +AWG + L+P+S G ++ F S+G T+VD+L T +MG+ + FE G Sbjct: 175 MMKHAWNGYVTYAWGSNELRPISHTGHSASIFGRGSMGATVVDALSTLKLMGMNEEFERG 234 Query: 149 KQWIKEELIFTKNKDVNFFEVTIRILGGLLTNHYFTQDQLFLDKAIDLGDRLMAAFSSPS 208 ++W+ + L F + D++ FE+TIR LGGLL+ + + +++F KA +LGD+L+ AF++P+ Sbjct: 235 RKWVAQNLNFNQASDISVFEMTIRFLGGLLSAYALSGEEVFKVKAKELGDKLLPAFNTPT 294 Query: 209 GIPYSDVNLGARTAHAPEWSH--YSTTAEVTTVQLEFRQLSRASGNPIFEEAAAAVSEKI 266 GIP++ VNL + + H W+ S AE T+ LEF LS +GN ++ + V E + Sbjct: 295 GIPWAMVNLASGSGHNWGWASGGCSILAEFGTLHLEFVYLSHITGNQVYAKKVHRVREVV 354 Query: 267 HQLPKKHGLVPIFINPNTGHFLPHATITLGARGDSYYEYLLKQWLQTGKTINYLLDDYLT 326 Q+ K +GL P ++NP TG + ++LGA GDS+YEYLLK W+ +GK D Y Sbjct: 355 DQVQKPNGLYPNYLNPRTGVW-GSQHVSLGALGDSFYEYLLKSWIMSGKMDKKARDMYDK 413 Query: 327 GIEGVREFLAKRSSPNKRLFIGELSAGSEAFNPKMDHLTCFLPGTLALGHLNGLPDWH-M 385 +E + L +RS + ++ E G KMDHL CF G ALG + H + Sbjct: 414 AVEAIERMLVQRSRKSNLTYLAEYKYG--RLEHKMDHLACFTAGMFALGAKESKNEKHYL 471 Query: 386 TMAEELLYTCYLTYAAHPTFLAPEITHFNLASTTDDMYTKSADAHSLLRPEFIESLWYMY 445 + EL TC+ Y T + PE F + + ++ + + +LRPE IE +YM+ Sbjct: 472 QLGAELANTCHEAYKRTATGIGPE--SFRFEGNAEAVAIRNNERYYILRPEVIEGWFYMW 529 Query: 446 QITGNTTYQEWGWQIFQ 462 + T ++ Y++W W+ Q Sbjct: 530 RFTRDSKYRDWAWEAAQ 546 >SB_7286| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0.4) Length = 107 Score = 113 bits (271), Expect = 4e-25 Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 2/105 (1%) Query: 428 DAHSLLRPEFIESLWYMYQITGNTTYQEWGWQIFQGFEKYAKVPN-GYSSLTNVKSENPI 486 DAH+LLRPE +ESL+ +Y++T + YQE+GW+IFQ FEK+ ++ + GYSS+ +V+ N Sbjct: 3 DAHNLLRPETVESLYILYRLTKDKKYQEYGWEIFQAFEKHTRIASGGYSSINSVRQLNHG 62 Query: 487 PRDMMESFFLSETXXXXXXXXSDDRFLIDLNKYVVNSEAHPLPIH 531 RD MESFFL ET S D ++ L+K+V N+EAHPLPIH Sbjct: 63 YRDKMESFFLGETLKYLFLLFS-DLDVVPLDKFVFNTEAHPLPIH 106 >SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 505 Score = 70.5 bits (165), Expect = 3e-12 Identities = 71/223 (31%), Positives = 103/223 (46%), Gaps = 36/223 (16%) Query: 95 FRHAWRGYKEHAWGHDNLKPV--SGMASDWFS---------LG---LTIVDSLDTAYIMG 140 F + Y +A+ HD L P+ +G D + LG LT+V++L T +MG Sbjct: 113 FYFGYESYMRYAFPHDELDPIHCTGRGPDRKNPTNININDVLGDYSLTLVEALGTLAVMG 172 Query: 141 LTDVFEEGKQWIKEELIFTKNKDVNFFEVTIRILGGLLTNHYFTQDQL------------ 188 + F+ Q + + + F + V FE IR+LG LL+ H +D L Sbjct: 173 NSTEFKLAVQHVIDNVHFDRKSTVQVFEANIRVLGSLLSAHMIIKDPLQPFGDMSPDDYD 232 Query: 189 --FLDKAIDLGDRLMAAFS-SPSGIPYSDVNLGARTAHAPEWSHYSTTAEVTTVQLEFRQ 245 L A DL +RL+ AF+ SP+GIPY VNL + A + A ++ LEF Sbjct: 233 DELLTLAHDLANRLVDAFNKSPTGIPYPRVNL--TSGEALRDRSDTCLAGAGSLLLEFGV 290 Query: 246 LSRASGNPIFEE-AAAAVSEKIHQLPKK----HGLVPIFINPN 283 LSR G+P FE A AV+ Q K G P+++N N Sbjct: 291 LSRLLGDPSFENLARKAVNMLWAQSRLKCLEGSGETPVYVNVN 333 >SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24) Length = 257 Score = 57.6 bits (133), Expect = 2e-08 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 31/277 (11%) Query: 203 AFSSPSGIPYSDVNL--GARTAHAPEWSHYSTTAEVTTVQLEFRQLSRASGNPIFEEAAA 260 AF +P+G+PY VNL G P + T+ T +EF +S +G+ F + A Sbjct: 9 AFDTPTGMPYGTVNLLYGVPKGETP----ITCTSGCGTFVIEFGTISALTGDQRFMDTAM 64 Query: 261 AVSEKIHQLPKKHGLVPIFINPNTGHFLPHATITLGARGDSYYEYLLKQWLQTGKTINYL 320 E + + GLV I+ +G + +GA DSY+EYLLK + G L Sbjct: 65 GALEGLWNSKSEIGLVGNHIDVVSGKWTA-LDAGIGAGVDSYFEYLLKGAILFGDP--KL 121 Query: 321 LDDYLTGIEGVREFLAKRSSPNKRLFIGELSAGSEAFNPKMDHLTCFLPGTLAL-GHLNG 379 ++ + E + + KR + ++ GS P L F PG L G + Sbjct: 122 MEMF----EELYGSIQKRLKFSDWYVWANMNKGSITM-PIFQSLEAFWPGLQVLYGDIGA 176 Query: 380 LPDWHMTMAEELLYTCYLTYAAHPTFLAPEITHFNLASTTDDMYTKSADAHSLLRPEFIE 439 + E ++ + Y P F F +AS + + + LRPE IE Sbjct: 177 -----ASRTIEKYHSVWREYGFLPEF-------FQIAS---GVPVSGREGYP-LRPELIE 220 Query: 440 SLWYMYQITGNTTYQEWGWQIFQGFEKYAKVPNGYSS 476 S Y+Y+ T + + E G I + E AK GY++ Sbjct: 221 SAVYLYRATKDPFFLEMGRDIVESIEASAKTLCGYAT 257 >SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 759 Score = 31.9 bits (69), Expect = 1.3 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 32 SKTGIVIIERGNEDSVQEKLRNTSLNAKPALDNTVQIKYDPTVYERPVFTGPKNDRQRAL 91 S + + + R S+ LRN ++ KP D+ + I+ T Y PK+ +QR Sbjct: 253 SHSTVEVPVRPRSTSLPPGLRNPAVYLKPGRDHNLHIRARQTPY-------PKSTQQRYP 305 Query: 92 VESFRHAWRGYKEHAWGHDNLKPVSGM 118 V F W+ + A G L VS M Sbjct: 306 VPDFLVDWQCCRATAMGRHRLARVSTM 332 >SB_54656| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 208 Score = 31.1 bits (67), Expect = 2.3 Identities = 14/42 (33%), Positives = 18/42 (42%) Query: 335 LAKRSSPNKRLFIGELSAGSEAFNPKMDHLTCFLPGTLALGH 376 L ++ PN R + AG P H+ C GT LGH Sbjct: 26 LPRKGKPNPRELEWSVLAGVHLARPDHQHVACLATGTKCLGH 67 >SB_840| Best HMM Match : Ornatin (HMM E-Value=3.4) Length = 254 Score = 30.3 bits (65), Expect = 4.1 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 400 AAHPTFLAPEITHFNLASTTDDMYTKSADAHSLLRPEFIESLWYMYQ-ITGNTTYQEWGW 458 A P + FN +++ K L E +ESLWY YQ +TG T+ E+ + Sbjct: 37 ADKPVQAGSGVNVFNSDERSNNHGRKMPFTFGPLTEERLESLWYFYQAVTGQTSRSEYAF 96 >SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) Length = 523 Score = 30.3 bits (65), Expect = 4.1 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 155 ELIFTKNKDVNFFEVTIRILGGLLTNHYFTQDQLFLDKAIDLGDRLM 201 E + ++N D+ F EVT RILG + + Q QLFL++A +R M Sbjct: 193 EKVRSENPDLPFHEVT-RILGNMWSQLPTPQKQLFLEEAEKDKERYM 238 >SB_4341| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 270 Score = 29.5 bits (63), Expect = 7.1 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 393 YTCYLTYAAHPTFLAPEITHFNLASTTDDMYTKSADAHSLLRPEFIESLWYMYQITGNTT 452 +T LTY T L + +F++ S +MY SA S+ P I W++ N Sbjct: 99 WTAILTYNWFVTNLLTQAFYFSITSLAGNMYLNSALMMSVGYP-LIPLAWFLQLSIMNDG 157 Query: 453 YQEWGWQI 460 Q+ WQ+ Sbjct: 158 NQKAIWQL 165 >SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1267 Score = 29.1 bits (62), Expect = 9.4 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 300 DSYYEYLLKQWLQTGKTINYLLDDYLTGIEGVREFLAKRSSPNKRL 345 +SY+ L +++ KT NYL+ D L +E V+E + K P+ ++ Sbjct: 541 ESYFFDLYREYDGEAKTKNYLVSDLLHELE-VKESITKACDPSTKV 585 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.319 0.135 0.412 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,467,618 Number of Sequences: 59808 Number of extensions: 723445 Number of successful extensions: 1342 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1319 Number of HSP's gapped (non-prelim): 14 length of query: 533 length of database: 16,821,457 effective HSP length: 85 effective length of query: 448 effective length of database: 11,737,777 effective search space: 5258524096 effective search space used: 5258524096 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 62 (29.1 bits)
- SilkBase 1999-2023 -