GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000564-TA|BGIBMGA000564-PA|IPR001382|Glycoside
hydrolase, family 47
         (533 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.096
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   1.6  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   4.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   6.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   8.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 29.1 bits (62), Expect = 0.096
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 313 TGKTINYLLDDYLTGIEG-VREFLAKRSSPNKRLFIGELSAGSE-----AFNPKMD---H 363
           T K  N L D+Y+  +E  +R+   ++ SP  + +I  L    E      F P ++    
Sbjct: 599 TSKHDNSLYDEYIPFLERELRKAHQEKDSPRIQTYIMALGMIGEPKILSVFEPYLEGKQQ 658

Query: 364 LTCFLPGTLALGHLNGLPDWHMTMAEELLYTCYL-TYAAH 402
           +T F   TL +G L  L + +  +A  +LY  YL T  +H
Sbjct: 659 MTVF-QRTLMVGSLGKLTETNPKLARSVLYKIYLNTMESH 697


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 161 NKDVNFFEVTIRILGGLLTN 180
           N D NF EV  RILG  + N
Sbjct: 391 NNDFNFDEVNFRILGANVNN 410


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 139 MGLT-DVFEEGKQWIKEELIFTKNKDVNFFEVTIRILGGLLTNHYFTQDQLFLDKAIDLG 197
           MGLT   F + ++ ++EE I   N        +  I   L  +H    D++ LDK +++ 
Sbjct: 44  MGLTFKDFIKMQELLQEEDISEGNIKKYLTNYSCFITCALEKSHIIQNDEIQLDKLVEMA 103

Query: 198 DR 199
           +R
Sbjct: 104 NR 105


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 471 PNGYSSLTNVKSENPIP 487
           PNGY+ L  +KS + IP
Sbjct: 38  PNGYAKLAAIKSGSYIP 54


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 161 NKDVNFFEVTIRILG 175
           N D NF EV  RILG
Sbjct: 557 NNDYNFNEVNFRILG 571


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 421 DMYTKSADAHSLLRPEFIESLW 442
           D   +  D +  L PEF +SLW
Sbjct: 51  DYIFEEGDDYVTLPPEFFDSLW 72


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 88  QRALVESFRHAWRGYKEHAWGHDNL 112
           QR++   FR + R YK     HD L
Sbjct: 37  QRSVSSGFRSSLRNYKTLISSHDEL 61


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,813
Number of Sequences: 429
Number of extensions: 6297
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 533
length of database: 140,377
effective HSP length: 61
effective length of query: 472
effective length of database: 114,208
effective search space: 53906176
effective search space used: 53906176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)