SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000564-TA|BGIBMGA000564-PA|IPR001382|Glycoside
hydrolase, family 47
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s...   378   e-105
At3g21160.1 68416.m02673 mannosyl-oligosaccharide 1,2-alpha-mann...   330   2e-90
At1g51590.1 68414.m05808 mannosyl-oligosaccharide 1,2-alpha-mann...   330   2e-90
At5g43710.1 68418.m05344 glycoside hydrolase family 47 protein s...   156   4e-38
At1g27520.1 68414.m03355 glycoside hydrolase family 47 protein S...   118   1e-26
At4g02405.1 68417.m00325 expressed protein                             33   0.47 
At1g48390.1 68414.m05405 syntaxin-related family protein contain...    31   1.9  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    31   2.5  
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...    29   5.8  
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo...    29   7.7  

>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
           similar to GI:5579331 from [Homo sapiens]; contains Pfam
           profile PF01532: Glycosyl hydrolase family 47
          Length = 624

 Score =  378 bits (930), Expect = e-105
 Identities = 223/499 (44%), Positives = 299/499 (59%), Gaps = 55/499 (11%)

Query: 87  RQRALVESFRHAWRGYKEHAWGHDNLKPVSGMASDWFS-LGLTIVDSLDTAYIMGLTDVF 145
           RQ+++ E+F HAW GY+++A G+D L P+S    D    LG T+VD+LDTA IMGL ++ 
Sbjct: 128 RQQSVKEAFDHAWSGYRKYAMGYDELMPISQKGVDGLGGLGATVVDALDTAMIMGLDNIV 187

Query: 146 EEGKQWIKEELI--FTKNKDVNFFEVTIRILGGLLTNHYFTQDQ--------------LF 189
            E   W++  L+   ++   VN FE TIR+LGGLL+ ++ +  +              ++
Sbjct: 188 SEAGSWVETHLLERISQKGQVNLFETTIRVLGGLLSAYHLSGGEQGTVNMTHVGPKPVIY 247

Query: 190 LDKAIDLGDRLMAAF-SSPSGIPYSDVNLGARTAHAPEWSHYSTTAEVTTVQLEFRQLSR 248
           L+ A DL DRL++AF SSP+ +P+ DV L   TAH P     S+TAEV +VQLEF  LS 
Sbjct: 248 LNIAKDLADRLLSAFTSSPTPVPFCDVILHESTAH-PAPGGASSTAEVASVQLEFNYLSS 306

Query: 249 ASGNPIFEEAAAAVSEKIHQLPKKHGLVPIFINPNTGHFLPHATITLGARGDSYYEYLLK 308
            SG+P +   A  V   I  LPK  GLVPI+I+P TG F+    I LG+RGDSYYEYL+K
Sbjct: 307 ISGDPKYSTEAMKVLAHIKTLPKTEGLVPIYISPQTGDFVGE-NIRLGSRGDSYYEYLIK 365

Query: 309 QWLQTGKTIN----YLLDDYLTGIEGVREFLAKRSSPNKRLFIGELSAGSEA-FNPKMDH 363
            WLQ G  +N    YL D Y+  ++GVR  L + S P   +F+GEL  GS+  F+PKMDH
Sbjct: 366 VWLQQGAKLNSNFTYLHDMYIEAMKGVRHLLVQNSIPKGLVFVGELPYGSKGEFSPKMDH 425

Query: 364 LTCFLPGTLALGHLNGLPD--------------WHMTMAEELLYTCYLTYAAHPTFLAPE 409
           L CFLPGTLALG   GL                 ++ +AE+L  TC+  Y    T LAPE
Sbjct: 426 LVCFLPGTLALGATKGLTKEQALKENLLSFEDLENLKLAEDLAKTCFEMYEVTATGLAPE 485

Query: 410 ITHFNLASTTDD---------MYT-----KSADAHSLLRPEFIESLWYMYQITGNTTYQE 455
           I +F+    T+D         MY      K AD H+LLRPE +ESL+ +Y+IT +T Y++
Sbjct: 486 IAYFHTKDYTEDGLDGGNKSSMYANDIIIKPADRHNLLRPETVESLFVLYRITKDTKYRD 545

Query: 456 WGWQIFQGFEKYAKVPN-GYSSLTNVKSENPIPRDMMESFFLSETXXXXXXXXSDDRFLI 514
            GWQIF+ FEKY KV + GY+SL +V    P  RD ME+FFL ET         DD  +I
Sbjct: 546 QGWQIFEAFEKYTKVKSGGYTSLDDVTEVPPHRRDKMETFFLGETLKYLYLLFGDDS-VI 604

Query: 515 DLNKYVVNSEAHPLPIHKN 533
            L+K+V N+EAHPLPI +N
Sbjct: 605 PLDKFVFNTEAHPLPIRRN 623


>At3g21160.1 68416.m02673 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 572

 Score =  330 bits (810), Expect = 2e-90
 Identities = 194/492 (39%), Positives = 290/492 (58%), Gaps = 24/492 (4%)

Query: 50  KLRNTSLNAKPALDNTVQIKYDPTVYE-RPVFTGPKN-DRQRALVESFRHAWRGYKEHAW 107
           KL    L  +  L+    +  D +V   + V   P +  R + + E+  HAW  Y+++AW
Sbjct: 59  KLNEEVLRLQQMLEEIKSVTEDVSVNSLKDVQEDPVDAQRMQRVKEAMVHAWSSYEKYAW 118

Query: 108 GHDNLKPVSGMASDWFS-LGLTIVDSLDTAYIMGLTDVFEEGKQWIKEELIFTKNKDVNF 166
           G D L+P +    D F  LG T++D+LDT YIMGL + F++ ++W+   L F K+   + 
Sbjct: 119 GQDELQPQTKDGVDSFGGLGATMIDALDTLYIMGLDEQFQKAREWVASSLDFDKDYAASM 178

Query: 167 FEVTIRILGGLLTNHYFTQDQLFLDKAIDLGDRLMAAFSSPSGIPYSDVNLGARTAHAPE 226
           FE TIR++GGLL+ +  + D++FL+KA+D+ DRL+ A+ + SGIPY+ +NL    AH P 
Sbjct: 179 FETTIRVVGGLLSAYDLSGDKIFLEKAMDIADRLLPAWDTQSGIPYNIINLKHGNAHNPT 238

Query: 227 WS-HYSTTAEVTTVQLEFRQLSRASGNPIFEEAAAAVSEKIHQLPKKHGLVPIFINPNTG 285
           W+   S  A+  T QLEF  LS+ +G+P +++    V   +++     GL+PI+INP+T 
Sbjct: 239 WAGGDSILADSGTEQLEFIALSQRTGDPKYQQKVEKVISVLNKNFPADGLLPIYINPDTA 298

Query: 286 HFLPHATITLGARGDSYYEYLLKQWLQTGKT--INYLLDDYLTGIEGVREFLAKRSSPNK 343
           +    +TIT GA GDS+YEYLLK W+   KT  + +  D +   + G+   L K+S+P  
Sbjct: 299 N-PSQSTITFGAMGDSFYEYLLKVWVFGNKTSAVKHYRDMWEKSMNGLLS-LVKKSTPLS 356

Query: 344 RLFIGELSAGSEAFNPKMDHLTCFLPGTLALGHLNGLPD-----WHMTMAEELLYTCYLT 398
             +I E S  S     KMD L CF PG LALG  +G  D       +T+AEEL +TCY  
Sbjct: 357 FTYICEKSGNS--LIDKMDELACFAPGMLALG-ASGYSDPAEGKKFLTLAEELAWTCYNF 413

Query: 399 YAAHPTFLAPEITHFNLASTTDDMYTKSADAHSLLRPEFIESLWYMYQITGNTTYQEWGW 458
           Y + PT LA E   FN  S   DM      + ++LRPE +ESL+Y++++TGN TYQEWGW
Sbjct: 414 YQSTPTKLAGENYFFNSGS---DM--SVGTSWNILRPETVESLFYLWRLTGNKTYQEWGW 468

Query: 459 QIFQGFEKYAKVPNGYSSLTNVKSENPIPRDMMESFFLSETXXXXXXXXSDDRFLIDLNK 518
            IF+ FEK +++ +GY  L +V +   +  + M+SFFL+ET        S    +I L++
Sbjct: 469 NIFEAFEKNSRIESGYVGLKDVNT--GVKDNKMQSFFLAETLKYLYLLFSPTT-VIPLDE 525

Query: 519 YVVNSEAHPLPI 530
           +V N+EAHPL I
Sbjct: 526 WVFNTEAHPLKI 537


>At1g51590.1 68414.m05808 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 560

 Score =  330 bits (810), Expect = 2e-90
 Identities = 185/452 (40%), Positives = 280/452 (61%), Gaps = 20/452 (4%)

Query: 87  RQRALVESFRHAWRGYKEHAWGHDNLKPVSGMASDWFS-LGLTIVDSLDTAYIMGLTDVF 145
           R++ + E+  HAW  Y+++AWG D L+P +   +D F  LG T+VDSLDT YIMGL + F
Sbjct: 97  RRQKVKEAMIHAWSSYEKYAWGKDELQPRTKDGTDSFGGLGATMVDSLDTLYIMGLDEQF 156

Query: 146 EEGKQWIKEELIFTKNKDVNFFEVTIRILGGLLTNHYFTQDQLFLDKAIDLGDRLMAAFS 205
           ++ ++W+   L F K+ D + FE TIR++GGLL+ +  + D++FL+KA D+ DRL+ A++
Sbjct: 157 QKAREWVASSLDFDKDYDASMFETTIRVVGGLLSAYDLSGDKMFLEKAKDIADRLLPAWN 216

Query: 206 SPSGIPYSDVNLGARTAHAPEWS--HYSTTAEVTTVQLEFRQLSRASGNPIFEEAAAAVS 263
           +P+GIPY+ +NL    AH P W+    S  A+  T QLEF  LS+ +G+P +++    V 
Sbjct: 217 TPTGIPYNIINLRNGNAHNPSWAAGGDSILADSGTEQLEFIALSQRTGDPKYQQKVEKVI 276

Query: 264 EKIHQLPKKHGLVPIFINPNTGHFLPHATITLGARGDSYYEYLLKQWLQTGKT--INYLL 321
            ++++     GL+PI+INP+  +   ++T T GA GDS+YEYLLK W+Q  KT  +    
Sbjct: 277 TELNKNFPADGLLPIYINPDNAN-PSYSTTTFGAMGDSFYEYLLKVWVQGNKTSAVKPYR 335

Query: 322 DDYLTGIEGVREFLAKRSSPNKRLFIGELSAGSEAFNPKMDHLTCFLPGTLALGHLNGLP 381
           D +   ++G+   L K+S+P+   +I E + G+   + KMD L CF PG LALG     P
Sbjct: 336 DMWEKSMKGLLS-LVKKSTPSSFTYICEKN-GNNLID-KMDELACFAPGMLALGASGYGP 392

Query: 382 DWH---MTMAEELLYTCYLTYAAHPTFLAPEITHFNLASTTDDMYTKSADAHSLLRPEFI 438
           D     +++A EL +TCY  Y + PT LA E   F   +   DM      + ++LRPE +
Sbjct: 393 DEEKKFLSLAGELAWTCYNFYQSTPTKLAGENYFF---TAGQDM--SVGTSWNILRPETV 447

Query: 439 ESLWYMYQITGNTTYQEWGWQIFQGFEKYAKVPNGYSSLTNVKSENPIPRDMMESFFLSE 498
           ESL+Y++++TGN TYQEWGW IFQ FEK ++V +GY  L +V +      + M+SFFL+E
Sbjct: 448 ESLFYLWRLTGNKTYQEWGWNIFQAFEKNSRVESGYVGLKDVNT--GAKDNKMQSFFLAE 505

Query: 499 TXXXXXXXXSDDRFLIDLNKYVVNSEAHPLPI 530
           T        S    +I L+++V N+EAHPL I
Sbjct: 506 TLKYLYLLFSPSS-VISLDEWVFNTEAHPLKI 536


>At5g43710.1 68418.m05344 glycoside hydrolase family 47 protein
           similar to mannosyl-oligosaccharide
           1,2-alpha-mannosidase IB [Mus musculus][SP|P39098]
          Length = 624

 Score =  156 bits (378), Expect = 4e-38
 Identities = 142/455 (31%), Positives = 208/455 (45%), Gaps = 48/455 (10%)

Query: 95  FRHAWRGYKEHAWGHDNLKPVSGMASDWFS-LGLTIVDSLDTAYIMGLTDVFEEGKQWIK 153
           F HA+ GY  +A+  D L+P+S    D      LT++DSLDT  ++G  + F    +WI 
Sbjct: 48  FYHAFDGYMNNAFPLDELRPLSCQGEDTLGGYALTLIDSLDTLALLGDRERFTSSVEWIG 107

Query: 154 EELIFTKNKDVNFFEVTIRILGGLLTNHYFTQDQL-----------FLDKAIDLGDRLMA 202
           + L F  NK V+ FE TIR+LGGLL+ H    D              L  A +L  R++ 
Sbjct: 108 KNLQFNINKTVSVFETTIRVLGGLLSAHLIASDYATGMRIPSYNNELLVLAENLARRMLP 167

Query: 203 AFSSPSGIPYSDVNLGARTAHAPEWSHYSTTAEVTTVQLEFRQLSRASGNPIFEEAAAAV 262
           AF +P+GIP+  VNL          S  ++TA   T+ LEF  LSR + +P+FE+ A   
Sbjct: 168 AFDTPTGIPFGSVNL--MYGVDKHESKITSTAGGGTLSLEFGVLSRLTNDPVFEQVAKNA 225

Query: 263 SEKIHQLPKKHGLVPIFINPNTGHFLPHATITLGARGDSYYEYLLKQWLQTGKTINYLLD 322
              +        LV   IN  TG +       +G   DS+YEYLLK ++  G       +
Sbjct: 226 VRGLWARRSNLDLVGAHINVFTGEW-TQKDAGIGTSIDSFYEYLLKAYILFGD------E 278

Query: 323 DYLTGIEGVREFLAKRSSPNKRLFIGELSAGSEAFN-PKMDHLTCFLPGTLAL-GHLNGL 380
           +YL   +    + +     +K  +  E++  S A   P  + L  F PG   L G ++  
Sbjct: 279 EYLYIFQ--EAYRSAMQYLHKDPWYVEVNMDSAAIVWPVFNSLQAFWPGLQVLAGDVDPA 336

Query: 381 PDWHMTMAEELLYTCYLTYAAHPTFLAPEITHFNLASTTDDMYTKSADAHSLLRPEFIES 440
              H        ++ +  Y        PE   FNLA+ +     KS      LRPE IES
Sbjct: 337 IRTHTA-----FFSVWKRYG-----FTPE--GFNLATLSVQYGQKSYP----LRPELIES 380

Query: 441 LWYMYQITGNTTYQEWGWQIFQGFEKYAKVPNGYSSLTNVKSENPIPRDMMESFFLSETX 500
            +++Y+ T +  Y + G       +  AK P GY  +T+V+       D MESFFL+ET 
Sbjct: 381 TYWLYKATRDPRYLDAGRDFVASLQYGAKCPCGYCHITDVELHK--QEDHMESFFLAETV 438

Query: 501 X---XXXXXXSDDRFLIDLN--KYVVNSEAHPLPI 530
                      D   L+D    KY+ ++E H LPI
Sbjct: 439 KYLWLLFDLAVDSDNLVDNGPYKYIFSTEGHLLPI 473


>At1g27520.1 68414.m03355 glycoside hydrolase family 47 protein
           Similar to gb|U04299 mannosyl-oligosaccharide
           alpha-1,2-mannosidase from Mus musculus. ESTs gb|R84145
           and gb|AA394707 come from this gene
          Length = 574

 Score =  118 bits (283), Expect = 1e-26
 Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 30/259 (11%)

Query: 84  KNDRQRALVESFRHAWRGYKEHAWGHDNLKPVSGMASDWFS-LG---------------L 127
           K   +  + E F HA+  Y  +A+ HD LKP++   +D  S LG               +
Sbjct: 34  KKQMREKVREMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLKLEHLPTDYNGSAV 93

Query: 128 TIVDSLDTAYIMGLTDVFEEGKQWIKEELIFTKNKDVNFFEVTIRILGGLLTNHYFTQD- 186
           T+V+SL +  I+G +  FE+G  W+ E L F  +  VN FE  IR+LGGL++ H    D 
Sbjct: 94  TLVESLSSLAILGNSTEFEKGVLWLSENLTFDIDARVNLFECNIRVLGGLISAHLLAIDP 153

Query: 187 ----------QLFLDKAIDLGDRLMAAFSSPSGIPYSDVNLGARTAHAPEWSHYSTTAEV 236
                        L  A DLG R + AF +P+G+PY+ +NL  +       +  ++T+  
Sbjct: 154 NNRLIQGSYNNQLLRLAEDLGKRFLPAFETPTGLPYAWINL--KNGVMENETTETSTSGC 211

Query: 237 TTVQLEFRQLSRASGNPIFEEAAAAVSEKIHQLPKKHGLVPIFINPNTGHFLPHATITLG 296
            ++ LE   LSR +G+P FE AA     ++ ++     L+   ++  TG ++ +++ ++G
Sbjct: 212 GSLVLEMGALSRLTGDPRFESAALRALRQLWRMRSSLDLLGTTLDVVTGEWIEYSS-SIG 270

Query: 297 ARGDSYYEYLLKQWLQTGK 315
           A  DS+YEYLLK ++  GK
Sbjct: 271 AGVDSFYEYLLKAYILFGK 289



 Score = 59.7 bits (138), Expect = 5e-09
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 433 LRPEFIESLWYMYQITGNTTYQEWGWQIFQGFEKYAKVPNGYSSLTNVKSENPIPRDMME 492
           LRPE  ES +Y+YQ T +  Y + G  + +    Y KVP G++S+ +V +      D   
Sbjct: 385 LRPELAESTFYLYQATKDPWYLDVGESMVKSLNLYTKVPGGFASVRDVTTMQ--LEDHQH 442

Query: 493 SFFLSETXXXXXXXXSDDRFLIDLNKYVVNSEAHPLPI 530
           SFFL+ET         DD F+   N Y+  +E HP+ +
Sbjct: 443 SFFLAETCKYLYLLF-DDSFVAKRN-YIFTTEGHPIQV 478


>At4g02405.1 68417.m00325 expressed protein
          Length = 333

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 208 SGIPYSDVNLGARTAHAPEWSHYSTTA--EVTTVQLEFRQLSRASGNPIFEEAAAAVSEK 265
           S    S ++L  ++  AP   H+  TA     T  L  R L RA   P  + A  + S  
Sbjct: 16  SSFKKSAISLRMQSLCAPPPVHFPATAIRRCRTPTLAVRSL-RAENEPSIQSALVSAS-- 72

Query: 266 IHQLPKKHGLVPIFINPNTGHFLPHAT 292
            H+L + +   P+FI+P    FLP  T
Sbjct: 73  -HRLRETNRTEPLFIDPYAACFLPPYT 98


>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
           At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
           thaliana]
          Length = 413

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 403 PTFLAPEITHFNLASTTDDMYTKSADAHSLLRPEFIESLWYMYQITGNTTYQE--WGWQI 460
           P F+AP + + + +S   + Y    D +SL+       L   +   G++      +GW  
Sbjct: 185 PCFIAPSLVYLDYSSYLSENYDL-IDLNSLVEARLNLRLLESFNNYGSSDNDGDVYGWDF 243

Query: 461 FQGFEKYAKVPNGYSSLTNVKSENPIPRDMMESF 494
              F+ Y  V N  + +TN+ + +  P D +E F
Sbjct: 244 NVPFDYYGDVTNLVAGITNITTLHLSP-DSLEVF 276


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 91   LVESFRHAWRGYKEHAWG-HDNLKPVSGMASDWFSLGLTIVDSLDTAYIMGLTDVFEEG 148
            L+ SF   +  Y EHAW  H +  P   +A D   +G  +   LD A      D+   G
Sbjct: 1609 LLRSFAKVYEEYTEHAWNTHSDTVPSKSLAPDSPEVGRIVDMDLDLAEDTKERDIIAAG 1667


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 132 SLDTA-YIMGLTDVFEEGKQWIKEELIFTKNKDVNFFEVTIRILGGLLTNHYFTQDQ 187
           S DT  Y+ G+ D  +  +    E LI  +N D+N +E+     G ++  H F +DQ
Sbjct: 294 SQDTGKYVFGVEDTLKALEMGAIETLIVWENLDINRYELKNSTTGEMVVKH-FGKDQ 349


>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
           3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
           contains Pfam profile PF00888: Cullin family
          Length = 732

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 249 ASGNPIFEEAAAAVSEKIHQLPKKHGLVPIFINPNTGHFLPHATITLGARGDSYYEYLLK 308
           ASG    E    A +  +H+  +K  L   FI   T H    + +   A+G S+ E L K
Sbjct: 44  ASGLSFEELYRNAYNMVLHKFGEK--LYTGFIATMTSHLKEKSKLIEAAQGGSFLEELNK 101

Query: 309 QWLQTGKTINYLLD 322
           +W +  K +  + D
Sbjct: 102 KWNEHNKALEMIRD 115


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,448,049
Number of Sequences: 28952
Number of extensions: 528999
Number of successful extensions: 1165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 15
length of query: 533
length of database: 12,070,560
effective HSP length: 84
effective length of query: 449
effective length of database: 9,638,592
effective search space: 4327727808
effective search space used: 4327727808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)

- SilkBase 1999-2023 -