Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000563-TA|BGIBMGA000563-PA|IPR005962|Tyrosine
3-monooxygenase, IPR001273|Aromatic amino acid hydroxylase
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    29   1.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    29   2.3  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   3.0  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    28   4.0  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   9.1  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 228 HASDLDNCNHLMTKYEPELDMNHPGFADKDYRERRKQIAEIAF--AYKYG--DPIPSIAY 283
           +A D++N   L+ +Y    D N     D  + E+  ++ ++AF   + YG       +  
Sbjct: 256 NAGDVENACSLVKEYSDFFDQNSQKSLDDHFNEKEVELNKLAFLQQFHYGIVYAFLKLRE 315

Query: 284 TEIENGTW 291
            EI N TW
Sbjct: 316 QEIRNLTW 323


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 441 NQQLKAYGAALLSSIGELLHALSDKPELRPFE-PASTSV---QPYQDQEYQP 488
           ++Q K   +A  S+I ++ H +SDKP   P   P+S S+   +P++++  +P
Sbjct: 650 SRQTKTVTSANSSNIRDMEHTISDKPRSEPDAIPSSKSMHSNKPFEEKSEKP 701


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 190 TRINLIQLIRSLRQSTAFAGVNLLTENNISSKTPWFPRHASDLDNC-NHLMTKYEPELDM 248
           T+  LI  +++L  ST    VN LT N I +   W  R    L +C +HL    +   D+
Sbjct: 400 TKEGLIDFLQAL-SSTFECMVNPLTNNKIQANLGWNERQRQCLSSCSSHLSLALQKSSDI 458


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 200 SLRQSTAFAGVNLLTENNISSKTPWFPRHASDLDNCNHLMTKYEPELDMNHPGFADKDYR 259
           SL+Q   + G ++L ++  +         AS L + N    K    +   +P      Y 
Sbjct: 241 SLKQVPTYLGTHVLQQDQSTYDQKVLMPPASYLSSPNQYTLK---NVSPGNPACPPFLYE 297

Query: 260 ERRKQIAEIAFAYKYGDPIPSIAYTEIENGTWQR-VFNT---VLDLMPKHACREYKAAFE 315
               Q+    F  K G PIP  AY+     T Q  + NT     D  P    +E +++F+
Sbjct: 298 HPNPQLTPEMFDVKQGSPIPPTAYSGSSCETSQHTIANTPFLAYDRSPSLTNQEAESSFQ 357

Query: 316 KLQAADIFVPHRIPQLE 332
            + +     PH +  ++
Sbjct: 358 DVASIS---PHSLSDVK 371


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 430 WFTVEFGLCKENQQLKAYGAALLSSIGELLHALSDKPELRPFEPASTSVQPYQ----DQE 485
           W      +CK    + A+G           +A+ +KP  + + P   +         D  
Sbjct: 177 WLPTHLWVCKRAHMINAWG-----------YAIPEKPTEKSYRPTHRAAFRKDAIAFDMS 225

Query: 486 YQPIYYVAETFEDAKDKF 503
           Y+P++ ++  +E  K+KF
Sbjct: 226 YEPLFCISGPYEALKEKF 243


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,994
Number of Sequences: 5004
Number of extensions: 99678
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 5
length of query: 561
length of database: 2,362,478
effective HSP length: 76
effective length of query: 485
effective length of database: 1,982,174
effective search space: 961354390
effective search space used: 961354390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)