Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000563-TA|BGIBMGA000563-PA|IPR005962|Tyrosine
3-monooxygenase, IPR001273|Aromatic amino acid hydroxylase
         (561 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...   687   0.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   8.8  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score =  687 bits (1698), Expect = 0.0
 Identities = 319/445 (71%), Positives = 374/445 (84%), Gaps = 1/445 (0%)

Query: 115 LTEEEVILQNXXXXXXXXXXXXXXXXXXXHMRDGMGSLARILKTIDNYKGCVQHLETRPS 174
           LTEEEV+L                      +R+G+GSLARILKTI+N+KG V H+E+RPS
Sbjct: 64  LTEEEVVLAKTIAECPESENTVQKAALVLRLREGIGSLARILKTIENFKGTVTHVESRPS 123

Query: 175 QVTGVQFDALVKVSMTRINLIQLIRSLRQSTAFAGVNLLTENNISSKTPWFPRHASDLDN 234
           +  G+QFD LVKV MTR  L+QLIR+LRQS+A  GV LL +N++S K PWFPRHASDLDN
Sbjct: 124 KKEGLQFDVLVKVDMTRQYLLQLIRNLRQSSALDGVTLLADNSVSIKDPWFPRHASDLDN 183

Query: 235 CNHLMTKYEPELDMNHPGFADKDYRERRKQIAEIAFAYKYGDPIPSIAYTEIENGTWQRV 294
           CNHLMTK+EP+LDMNHPGFADK+YR RRK IAEIAFAY+YGD IP++ YTE E  TW RV
Sbjct: 184 CNHLMTKFEPDLDMNHPGFADKEYRARRKFIAEIAFAYRYGDAIPTVPYTETETETWTRV 243

Query: 295 FNTVLDLMPKHACREYKAAFEKLQAADIFVPHRIPQLEDVSSFLRKHTGFTLRPAAGLLT 354
           FNT++DL+PKHAC EY+  F+K+Q   IF PHRIPQL++VS FL+K+TGFTLRPAAGLLT
Sbjct: 244 FNTLVDLVPKHACAEYRRNFKKMQEEKIFEPHRIPQLQEVSEFLKKNTGFTLRPAAGLLT 303

Query: 355 ARDFLASLAFRVFQSTQYVRHNNSPFHTPEPDCIHELLGHIPLLADPSFAQFSQEIGLAS 414
           +RDFL+SLAFRVFQSTQY+RH  SP+HTPEPDCIHELLGH+PLLADPSFAQFSQEIGLAS
Sbjct: 304 SRDFLSSLAFRVFQSTQYIRHIKSPYHTPEPDCIHELLGHMPLLADPSFAQFSQEIGLAS 363

Query: 415 LGASDSEIEKLSTVYWFTVEFGLCKENQQLKAYGAALLSSIGELLHAL-SDKPELRPFEP 473
           LGASD EIEKLST+YWFTVEFGLCKE   +KAYGA LLS+ GELLHAL S K E RPFEP
Sbjct: 364 LGASDEEIEKLSTIYWFTVEFGLCKEGPDVKAYGAGLLSAYGELLHALTSGKCEHRPFEP 423

Query: 474 ASTSVQPYQDQEYQPIYYVAETFEDAKDKFRRWVSTMSRPFEVRFNPHTERVEVLDSVDK 533
            ST+VQ YQDQ+YQPIY+VA++FEDAK+KFRRWVSTMSRPFEVR++P+T+RVE+LDSVD+
Sbjct: 424 KSTAVQKYQDQDYQPIYFVADSFEDAKEKFRRWVSTMSRPFEVRYDPYTQRVEILDSVDR 483

Query: 534 LETLIWQLNTEMLHLTNAVKKLKGS 558
           L+ L+ Q+NTEM HLTNAV KLK S
Sbjct: 484 LDNLMAQVNTEMTHLTNAVNKLKTS 508



 Score =  122 bits (295), Expect = 6e-30
 Identities = 60/66 (90%), Positives = 63/66 (95%)

Query: 1  MAVAAAQKNREMFAIKKSYSIENGYPSRRRSLVDDARFETLVVKQTKQSVLEEARARAND 60
          MAVAAAQKNREMFAIKKSYSIENGYP+RRRSLVDDARFETLVVKQTKQSVLEEAR RAND
Sbjct: 2  MAVAAAQKNREMFAIKKSYSIENGYPARRRSLVDDARFETLVVKQTKQSVLEEARQRAND 61

Query: 61 SGLESD 66
          +GL  +
Sbjct: 62 AGLTEE 67


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 228 HASDLDNCNHLMTKYEPELDMNHPGFADKD 257
           H++D+ NC+ +  K+E    M+     D D
Sbjct: 319 HSTDIQNCDSVKIKFETLHTMDSSDTIDID 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,227
Number of Sequences: 429
Number of extensions: 5931
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 561
length of database: 140,377
effective HSP length: 61
effective length of query: 500
effective length of database: 114,208
effective search space: 57104000
effective search space used: 57104000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)