GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000563-TA|BGIBMGA000563-PA|IPR005962|Tyrosine
3-monooxygenase, IPR001273|Aromatic amino acid hydroxylase
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0586 - 4339090-4339194,4340186-4340366,4340531-4340601,434...    32   1.4  
06_03_0528 + 21782567-21782651,21783355-21783563,21784095-217842...    31   2.4  
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154...    31   3.2  
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584           29   7.4  
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192...    29   7.4  
02_02_0393 - 9711835-9712388,9712438-9712657,9713007-9713271,971...    29   9.8  

>03_01_0586 -
           4339090-4339194,4340186-4340366,4340531-4340601,
           4340689-4340826,4341342-4342337
          Length = 496

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 253 FADKDYRERRKQIAEIAFA-----YKYGDPIPSIAYTEIENGTWQRVFNTVLDLMPK-HA 306
           F   D +E +K+    AF      ++   P+P++ +  + N   +RV N + D + +   
Sbjct: 162 FIKNDTQEEQKKPHPAAFKRPASNFRRRSPVPNVKFQPVTNVDAERVINNINDAVQEAKP 221

Query: 307 CREYKAAFEKLQAADIFVPHRIPQLEDVS 335
             E KAA ++  +   F P+ + + E++S
Sbjct: 222 TLENKAATDEPDSVSTFEPNSVIEPENLS 250


>06_03_0528 +
           21782567-21782651,21783355-21783563,21784095-21784232,
           21784520-21784734,21784813-21784967,21785010-21785071,
           21785832-21785834
          Length = 288

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 24/77 (31%), Positives = 33/77 (42%)

Query: 181 FDALVKVSMTRINLIQLIRSLRQSTAFAGVNLLTENNISSKTPWFPRHASDLDNCNHLMT 240
           F   ++VSM R N+I L     + T  + V L  E N S     F R  S +      + 
Sbjct: 93  FIGFIQVSMPRSNVIILTDPNSKLTHGSAVILPIEGNYSRGNLMFQRIRSYIAFLEQRLE 152

Query: 241 KYEPELDMNHPGFADKD 257
           + E   D+NH  F D D
Sbjct: 153 ELETVEDINHLIFTDSD 169


>02_05_0863 +
           32313890-32314132,32314227-32314517,32315157-32315493,
           32315944-32316278,32316763-32317010,32317296-32317881,
           32317970-32318083,32318165-32318287,32318325-32318531
          Length = 827

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 373 VRHNNSPFHTPEPDCIHELLGHIPLLADPSFAQFSQEIGLASLGASDSEIEKLSTVYWFT 432
           + H N+P+ +  P C         +  +P+       +G A  G+ DS++E+ S  +W  
Sbjct: 499 IEHENAPWASRTPLCSLHSWSFTGIFPEPAPRSPLMVVGAA--GSVDSDMERRSVTHWEE 556

Query: 433 VEFGLCKENQQLKAYGAALLSSIGELLHALSDKPELR 469
            E    ++ + L    A    S+ ++ H+    PE+R
Sbjct: 557 TE-STREDGELLAVVPAENTPSVSKISHS-EVSPEVR 591


>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
          Length = 607

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 153 ARILKTIDNYKGCVQHLETRPSQVTGVQFDALVKVSMTRINLIQLIRSLRQSTAFAGVNL 212
           A ++  +DN +    +  T P    GVQ D  V  ++T I+L  +  S R S A   +  
Sbjct: 149 ASLIDPLDNLQSWTTNATTSPCSYLGVQCDP-VTGTVTEISLASMNLSGRISPAIGALAA 207

Query: 213 LTENNISSKT 222
           LT  ++   T
Sbjct: 208 LTRLDLGDNT 217


>01_07_0061 +
           40818077-40818241,40818494-40818716,40819015-40819263,
           40819455-40819505,40819611-40819871,40819994-40820046,
           40820234-40820348,40820475-40820696,40821280-40822253
          Length = 770

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 34  DDARFETLVVKQTKQSVLEEARARANDSGLESDFIQDGVHIGNGDNSPTVE 84
           D A FE+LV++  KQ + EE+    +   LE + I++   IG G   PT E
Sbjct: 630 DPAEFESLVIENLKQFIHEESLYSQSSHSLEGESIKE---IG-GVTDPTSE 676


>02_02_0393 -
           9711835-9712388,9712438-9712657,9713007-9713271,
           9713409-9713476,9713587-9714209,9714307-9714462,
           9714551-9714648,9714734-9714825,9714928-9715017
          Length = 721

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 279 PSIAYTEIENGTWQRVFNTVLDLMPKHACREYKAAFEKLQAADIFVP 325
           P + Y +I+   + + FN  L L PK  C  Y     +L    I VP
Sbjct: 576 PGLVY-DIDPKEYTKFFNCTLTLGPKDDCESYVGQLYQLNLPSIVVP 621


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,426
Number of Sequences: 37544
Number of extensions: 586610
Number of successful extensions: 1311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1310
Number of HSP's gapped (non-prelim): 6
length of query: 561
length of database: 14,793,348
effective HSP length: 86
effective length of query: 475
effective length of database: 11,564,564
effective search space: 5493167900
effective search space used: 5493167900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)