GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000562-TA|BGIBMGA000562-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation
         (157 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   0.69 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   0.69 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   0.91 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   6.4  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription
          factor homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 0.69
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 51 NGTIPIVLDTLKQHYFI 67
          N  +P+VLD +  HY I
Sbjct: 13 NNNVPVVLDVIPPHYNI 29


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 0.69
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 85  KLLLPTDFPDMELLLHEAHYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETEL 144
           KL   T F D    + EA++ +LD +V   S           +   L+   D++KQ+ E 
Sbjct: 251 KLKRATRFNDFNEAIKEAYFPKLDSLV---SSRAWPSRVANQKLRDLNREVDQIKQDVED 307

Query: 145 LMQERDRL 152
           L +  DR+
Sbjct: 308 LKRWSDRI 315


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 0.91
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 57  VLDTLKQHYFIDRDGGMFRHILNFLRNKKLLLPT 90
           V D ++   ++  DG ++ H  N+  +K L+LP+
Sbjct: 150 VADFVRVEAWVGSDGSLYNHTANY-DSKYLVLPS 182


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/22 (27%), Positives = 15/22 (68%)

Query: 130 WLSDASDRLKQETELLMQERDR 151
           W ++A  RLK+E ++  + +++
Sbjct: 134 WFANARRRLKKENKMTWEPKNK 155


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,452
Number of Sequences: 317
Number of extensions: 1619
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 157
length of database: 114,650
effective HSP length: 52
effective length of query: 105
effective length of database: 98,166
effective search space: 10307430
effective search space used: 10307430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)