GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000562-TA|BGIBMGA000562-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    30   0.14 
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    29   0.25 
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    28   0.57 
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   1.3  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   4.0  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   7.0  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    25   7.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    24   9.3  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    24   9.3  

>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 113 ALSKLKHGREGVKHEC-EWL--SDASDRLKQETELLMQERDRLQQ 154
           +L  +K+ +E ++HE  E L  S A D+L QE+E+ +Q R   +Q
Sbjct: 619 SLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVTVQRRKECEQ 663


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 61  LKQHYFIDRDGGMFRHILNFLRNKKLLLP 89
           L  HYF+D  GGM   I+ F+  +KL LP
Sbjct: 291 LTHHYFVDLVGGMCLAIICFVFAQKLRLP 319


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 101 EAHYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRLQQ 154
           ++++F++      L   +H  E   HE + +S+ SD  +  +EL++Q R +L+Q
Sbjct: 291 QSNHFQVGARRLRLKDSQHSFEQYIHEIKKISNISDARRLRSELMVQRR-QLEQ 343


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 28  GTIYTSSLETLTAYPESRLGKMFNGTIPIVLDTLKQHYFIDRDGGMFRHILNFLRNKKLL 87
           GT+    L  L  +P   +   F   I I LD  +++  I+   G +    + LR+ + L
Sbjct: 258 GTVCARPLSGLNKHPHE-IDVKFED-ISISLDPREEYVMIEATSGYWEAYKHVLRSLQRL 315

Query: 88  LPTDFPDMELLLH 100
             + FP  + L+H
Sbjct: 316 SASTFPMKDYLVH 328


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 115 SKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRLQ 153
           SKL    +  +   +W+S+A + L+++ EL+  E + L+
Sbjct: 101 SKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLK 139


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 76  HILNFLRNKKLLLPTDFPDMELLLHEAH 103
           +++N L N+  L PT + +   L H+AH
Sbjct: 384 NLVNDLDNRHCLTPTQYEEAIELRHQAH 411


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 113 ALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDR 151
           A  KL+H +     + E      D +++E +++ QER++
Sbjct: 343 AQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNK 381


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 106 ELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRL 152
           EL H+     +LK      K E +      +RL  E + L+ ER+RL
Sbjct: 739 ELLHVNSLAERLKGELNASKGEKDLRKRTQERLISENDKLLAERERL 785


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 96  ELLLHEAHYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQE 141
           ELL+HE    E  ++ FALS+L +        CE     +D +  E
Sbjct: 479 ELLIHERILHEEKNLKFALSELSNSNIFDSLVCEERERVTDDIVYE 524


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,889
Number of Sequences: 5004
Number of extensions: 31268
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 9
length of query: 157
length of database: 2,362,478
effective HSP length: 67
effective length of query: 90
effective length of database: 2,027,210
effective search space: 182448900
effective search space used: 182448900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)