GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000562-TA|BGIBMGA000562-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation
         (157 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-10|CAJ14161.1|  519|Anopheles gambiae Sply, Sphingosine...    25   1.5  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   2.6  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   2.6  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   2.6  

>CR954257-10|CAJ14161.1|  519|Anopheles gambiae Sply,
           Sphingosine-phosphate lyase protein.
          Length = 519

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 17  KYNAPVHID--VGGTIYTSSLETLTAYPESRLGKMFNGTIPIVLDTLKQHYFIDRDGGMF 74
           KYN PVH+D  +GG +          YP         G   I  DT K + F  +   + 
Sbjct: 267 KYNIPVHVDACLGGFLIV--FMKRAGYPVRPFDFSIPGVTSISADTHK-YGFTPKGSSVI 323

Query: 75  RHILNFLRNKKLLLPTDFP 93
            +     R+ +  + T++P
Sbjct: 324 LYSEKVYRHYQYTVTTEWP 342


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 106  ELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQE 148
            E D  VF LS + H R      CE ++  SD L++   +L  +
Sbjct: 3233 EEDFNVF-LSTVNHSRTFYYQLCERIAALSDELEESRHILQHK 3274


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 8/16 (50%), Positives = 15/16 (93%)

Query: 138 LKQETELLMQERDRLQ 153
           LK ET++L++E+++LQ
Sbjct: 455 LKDETKVLLEEKEKLQ 470


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 51  NGTIPIVLDTLKQHYFIDRDGGMFRHI 77
           + T P+VL+ L  H+F  +D    +H+
Sbjct: 264 DSTNPMVLNHLANHFFFKKDYQKVQHL 290


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,625
Number of Sequences: 2123
Number of extensions: 7126
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 157
length of database: 516,269
effective HSP length: 59
effective length of query: 98
effective length of database: 391,012
effective search space: 38319176
effective search space used: 38319176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)