GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000562-TA|BGIBMGA000562-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation
         (157 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.8  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 61 LKQHYFIDRDGGMFRHI 77
          +K+  F+D+DG    H+
Sbjct: 67 MKKFSFVDKDGNFNEHV 83


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 95  MELLLHEAHYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRLQ 153
           +E+     H  E D ++F  S   +G EG+     ++SD          +L+ E+ R Q
Sbjct: 374 LEMKGQMVHCPESDSILFVSSPFLNGLEGLTGRGLFISDIPLHDATRDVILVGEQARAQ 432


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,727
Number of Sequences: 429
Number of extensions: 1956
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 157
length of database: 140,377
effective HSP length: 53
effective length of query: 104
effective length of database: 117,640
effective search space: 12234560
effective search space used: 12234560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)