Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000562-TA|BGIBMGA000562-PA|IPR000210|BTB, IPR003131|K+
channel tetramerisation
(157 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55000.2 68418.m06850 potassium channel tetramerisation domai... 68 3e-12
At5g55000.1 68418.m06849 potassium channel tetramerisation domai... 68 3e-12
At3g09030.1 68416.m01059 potassium channel tetramerisation domai... 34 0.038
At4g10530.1 68417.m01725 subtilase family protein contains simil... 31 0.27
At5g41330.1 68418.m05023 potassium channel tetramerisation domai... 30 0.63
At1g27030.1 68414.m03295 expressed protein 30 0.63
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam... 30 0.83
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 30 0.83
At1g68790.1 68414.m07863 expressed protein 29 1.4
At1g24310.1 68414.m03067 expressed protein 28 2.5
At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa... 28 3.3
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote... 27 4.4
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 27 4.4
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ... 27 5.8
At3g20230.1 68416.m02563 50S ribosomal protein L18 family simila... 27 5.8
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 27 5.8
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo... 27 7.7
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f... 27 7.7
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 27 7.7
At1g52150.2 68414.m05885 homeobox-leucine zipper family protein ... 27 7.7
At1g52150.1 68414.m05884 homeobox-leucine zipper family protein ... 27 7.7
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f... 27 7.7
At1g27020.1 68414.m03294 expressed protein 27 7.7
At1g20470.1 68414.m02551 auxin-responsive family protein similar... 27 7.7
>At5g55000.2 68418.m06850 potassium channel tetramerisation
domain-containing protein / pentapeptide
repeat-containing protein contains Pfam profiles
PF02214: K+ channel tetramerisation domain, PF00805:
Pentapeptide repeats (8 copies)
Length = 298
Score = 67.7 bits (158), Expect = 3e-12
Identities = 36/94 (38%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 15 TTKYNAPVHIDVGGTIYTSSLETLTAY-PESRLGKMFNGTIPIVLDTLKQHYFIDRDGGM 73
++ ++ V +++GG + ++++TLT P+S L MF+G + ++ K + FIDRDG
Sbjct: 4 SSNLSSMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKH 63
Query: 74 FRHILNFLRNKKLLLPTDFPDMELLLHEAHYFEL 107
FRHILN+LR+ + +D PD LL EA Y++L
Sbjct: 64 FRHILNWLRDGVIPSLSD-PDCSELLREADYYQL 96
>At5g55000.1 68418.m06849 potassium channel tetramerisation
domain-containing protein / pentapeptide
repeat-containing protein contains Pfam profiles
PF02214: K+ channel tetramerisation domain, PF00805:
Pentapeptide repeats (8 copies)
Length = 290
Score = 67.7 bits (158), Expect = 3e-12
Identities = 36/94 (38%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 15 TTKYNAPVHIDVGGTIYTSSLETLTAY-PESRLGKMFNGTIPIVLDTLKQHYFIDRDGGM 73
++ ++ V +++GG + ++++TLT P+S L MF+G + ++ K + FIDRDG
Sbjct: 4 SSNLSSMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKH 63
Query: 74 FRHILNFLRNKKLLLPTDFPDMELLLHEAHYFEL 107
FRHILN+LR+ + +D PD LL EA Y++L
Sbjct: 64 FRHILNWLRDGVIPSLSD-PDCSELLREADYYQL 96
>At3g09030.1 68416.m01059 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 460
Score = 34.3 bits (75), Expect = 0.038
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 22 VHIDVGGTIYTSSLETL-TAYPESRLGKMFNGTIPIVLDTLKQHYFIDRDGGMFRHILNF 80
V ++VGG I+ ++ T+ ++ P+S L + T FIDRD +F ILN
Sbjct: 10 VKLNVGGEIFETNASTIQSSCPDSLLAALSTST-----SHGSNPVFIDRDPEIFAVILNL 64
Query: 81 LRNKKLLLPTD--FPDMELLLHEAHYFELDHMV 111
LR +L + F E LL EA Y+ ++ ++
Sbjct: 65 LRTGRLPANSSGVFSKQE-LLDEAMYYGVESLL 96
>At4g10530.1 68417.m01725 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 747
Score = 31.5 bits (68), Expect = 0.27
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 47 GKMFNGTIPIVLDTLKQHYFIDRDGGMFRHILNFLRNKKLLLPTDF 92
G++FNG+I + YFID + F +LN N L P DF
Sbjct: 171 GELFNGSIHCNRKLIGAKYFIDANNAQF-GVLNKTENPDYLSPRDF 215
>At5g41330.1 68418.m05023 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 458
Score = 30.3 bits (65), Expect = 0.63
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 22 VHIDVGGTIYTSSLETLT-AYPESRLGKMFNGTIPIVLDTLKQHYFIDRDGGMFRHILNF 80
V I+VGG I+ ++ +TL+ A +S L ++ T F+DRD +F +L
Sbjct: 13 VSINVGGRIFQTTKQTLSLAGTDSLLSQLATETT----------RFVDRDPDLFSVLLYI 62
Query: 81 LRNKKLLLPTDFPDMELLLHEAHYFELD 108
LR L + D+ L+ E+ Y+ ++
Sbjct: 63 LRTGNLPARSRAFDVRDLIDESRYYGIE 90
>At1g27030.1 68414.m03295 expressed protein
Length = 310
Score = 30.3 bits (65), Expect = 0.63
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 103 HYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRL 152
H + ++H+ FA+ + KH +K + L + +L + E+L +D L
Sbjct: 187 HGYTMNHLAFAVHRFKHRFSDIKFVKQRLEEKGFKLNSDGEILKVSQDGL 236
>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
PF04136: Sec34-like family profile; similar to Conserved
oligomeric Golgi complex component 3 (Vesicle docking
protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
sapiens]
Length = 784
Score = 29.9 bits (64), Expect = 0.83
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 51 NGTIPIVLDTLKQHY--FIDRDGGMFRHILNFLRNKKLLLPTDFPDMELLLHEAHYFELD 108
+G I VL Q Y F D + M R+ L + +LH+ +D
Sbjct: 81 SGAIEAVLVNTNQFYKWFTDLESAMKSETEEKYRHYVSTLTERIQTCDNILHQ-----VD 135
Query: 109 HMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRLQQR 155
+ ++L+ +GV + + L DA DRL E + LM+ + L+ +
Sbjct: 136 ETLDLFNELQLQHQGVTTKTKTLHDACDRLLMEKQKLMEFAEALRSK 182
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 29.9 bits (64), Expect = 0.83
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 94 DMELLLHEAHYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRLQ 153
D + LL FE D + LS + H ++ + E E + L++E+E + + +D+L+
Sbjct: 662 DEKDLLDRMAQFE-DKRMAELSDINHQKQALNREMEEMMSKRSALQKESEEIAKHKDKLK 720
Query: 154 QR 155
++
Sbjct: 721 EQ 722
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 131 LSDASDRLKQETELLMQERDRLQQ 154
L D++KQE ELL++ER+ L+Q
Sbjct: 504 LKQQIDKVKQEEELLLKEREELKQ 527
>At1g24310.1 68414.m03067 expressed protein
Length = 377
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 113 ALSKLKHGREGVKHECEW------LSDASDRLKQETELLMQERDRLQ 153
A+SKL+ G + + E W D S RLK + E+L+ +RDR++
Sbjct: 174 AMSKLE-GMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIK 219
>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase family
protein similar to Potential phospholipid-transporting
ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0], Mus
musculus [SP|P70704]; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1243
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 80 FLRNKKLLLPTDFPDMELLLHEAHYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLK 139
+L + ++ T P + + + LDH + + ++KH R V+ EC W + S + +
Sbjct: 1136 WLTSLLVIAATTLPYLAYISFQRSLNPLDHHI--IQEIKHFRIDVQDECMWTRERS-KAR 1192
Query: 140 QETEL 144
++T++
Sbjct: 1193 EKTKI 1197
>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
kinase, putative CLAVATA1 receptor kinase, Arabidopsis
th., PATX:G2160756
Length = 992
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 24 IDVGGTIYTSSLETLTAYPESRLGKMFNGTIPIVLDTLKQHYFIDRDGGMF 74
++ G + L TL AY S FNG++P+ L TL + +D G F
Sbjct: 141 LETRGFSQMTQLVTLDAYDNS-----FNGSLPLSLTTLTRLEHLDLGGNYF 186
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 31 YTSSLETLTAY-PESRLGKMFNGTIPIVLDTLKQHY 65
+ S+E L + PESR MF+ T P+ + + K Y
Sbjct: 313 FQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRY 348
>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 901
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 80 FLRNKKLLLPTDFPDMELLLHEAHYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLK 139
F+ + + FP + L + EL+ + + R+ + H CE L + D LK
Sbjct: 797 FIGRRMVCSKGGFPQLRAL-QISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLK 855
Query: 140 QETELLMQERDRLQQRW 156
T L + + +++ W
Sbjct: 856 YVTSLKELKIEGMKREW 872
>At3g20230.1 68416.m02563 50S ribosomal protein L18 family similar
to ribosomal protein L18 (GI:29342325) [Enterococcus
faecalis V583]; similar to 50S ribosomal protein L18
(Swiss-Prot:O24704) [Synechococcus sp.]
Length = 187
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 43 ESRLGKMFNGTIPIVLDTLKQHYFI 67
E R G+ G + IV+DT+K+H I
Sbjct: 160 EPRKGERIEGKLGIVIDTIKEHGII 184
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 121 REGVKHECEWLSDASDRLKQETELLMQERDRLQQRWS 157
RE + E L + +L +LLM+E DRLQ++ S
Sbjct: 80 REKQRKEAARLQTVNRKLNAMNKLLMEENDRLQKQVS 116
>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
to HD-zip transcription factor Revoluta (GI:9759333)
{Arabidopsis thaliana}; contains Pfam profiles PF01852:
START domain and PF00046: Homeobox domain
Length = 842
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 121 REGVKHECEWLSDASDRLKQETELLMQERDRLQQRWS 157
R+ + E L + +L +LLM+E DRLQ++ S
Sbjct: 80 RDKQRKEASRLQSVNRKLSAMNKLLMEENDRLQKQVS 116
>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
factor (HB-8) identical to HD-zip transcription factor
(athb-8) (GI:7270235) [Arabidopsis thaliana]
Length = 833
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 121 REGVKHECEWLSDASDRLKQETELLMQERDRLQQRWS 157
RE + E L + +L +LLM+E DRLQ++ S
Sbjct: 70 REKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVS 106
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 26.6 bits (56), Expect = 7.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 99 LHEAHYFELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRLQQR 155
LH A + D + A+ K E H+ E DRL++E E ERDRL++R
Sbjct: 214 LHLASTIDYDEEISAVLKKV---EPNAHKLEEHRRKYDRLRKEREDKKAERDRLRRR 267
>At1g52150.2 68414.m05885 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
to HD-zip transcription factor (athb-8) (GI:7270235)
[Arabidopsis thaliana]; contains Pfam profiles PF01852:
START domain, PF00046: Homeobox domain
Length = 837
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 121 REGVKHECEWLSDASDRLKQETELLMQERDRLQQRWS 157
RE + E L + +L +LLM+E DRLQ++ S
Sbjct: 72 REKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVS 108
>At1g52150.1 68414.m05884 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
to HD-zip transcription factor (athb-8) (GI:7270235)
[Arabidopsis thaliana]; contains Pfam profiles PF01852:
START domain, PF00046: Homeobox domain
Length = 836
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 121 REGVKHECEWLSDASDRLKQETELLMQERDRLQQRWS 157
RE + E L + +L +LLM+E DRLQ++ S
Sbjct: 72 REKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVS 108
>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
factor (HB-9) identical to HD-Zip protein GB:CAA71854
GI:2145358 from [Arabidopsis thaliana]
Length = 841
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 121 REGVKHECEWLSDASDRLKQETELLMQERDRLQQRWS 157
RE + E L + +L +LLM+E DRLQ++ S
Sbjct: 76 REKQRKESARLQTVNRKLSAMNKLLMEENDRLQKQVS 112
>At1g27020.1 68414.m03294 expressed protein
Length = 308
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 105 FELDHMVFALSKLKHGREGVKHECEWLSDASDRLKQETELLMQERDRL 152
+ ++H+ FA+ +LKH +K E+ + L ++ +L D L
Sbjct: 189 YTMNHLAFAVHRLKHRFSDIKCVKEYFEENGFELNKDGGVLKVSEDSL 236
>At1g20470.1 68414.m02551 auxin-responsive family protein similar
to indole-3-acetic acid induced protein ARG7
(SP:P32295) [Vigna radiata]
Length = 146
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 70 DGGMFRHILNFLRNKKL 86
DGG+ HIL LRNK L
Sbjct: 74 DGGLMDHILMLLRNKSL 90
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,821,433
Number of Sequences: 28952
Number of extensions: 155187
Number of successful extensions: 429
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 27
length of query: 157
length of database: 12,070,560
effective HSP length: 75
effective length of query: 82
effective length of database: 9,899,160
effective search space: 811731120
effective search space used: 811731120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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