Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000561-TA|BGIBMGA000561-PA|undefined
         (66 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)                 27   2.8  
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         26   4.9  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       26   4.9  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             25   6.5  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      25   8.6  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   25   8.6  

>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
          Length = 607

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 39  ISTISQFLCPNQAHLGVACC 58
           I+T+S+F CPN  HL V  C
Sbjct: 267 IATVSEF-CPNLEHLNVRSC 285


>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 2  AVTVCSSPLLTQTPFSEEDCIRQGGICV 29
          A+ V SS  + Q P SE+ C  QG  CV
Sbjct: 11 ALLVVSSSGIKQDPCSEKTCSNQGEECV 38


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 7    SSPLLTQ----TPFSEEDCIRQGGICVRTEECDPD-----NISTISQFLCPNQAHLGVAC 57
            + PLLT+     P + E  +  GGI +    C+P+      + T S  +CP+ ++ G  C
Sbjct: 1487 TEPLLTKPPSDVPMAVEIILHDGGISLLANPCEPNPCQHGGVCTESGCMCPS-SYYGTYC 1545


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 13  QTPFSEEDCIRQGGICVRTEEC-DPDNISTISQFLCP-NQAHLGVACC 58
           +T   +++C    G+C R E+C +        Q  CP N   LG   C
Sbjct: 372 RTCMDDDECAGSDGVCQRDEQCFNTKGSYRCVQTSCPANYNQLGPGFC 419


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 5  VCSSPLLTQTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPN 49
          +C       TP  E+D +  G +CVR   C      T  +  CP+
Sbjct: 8  MCFGNATRATPTFEKDVLEWGRVCVRGHYCP---AGTTREIPCPS 49


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 8    SPLLTQTPFSEEDCIRQG---GICVRTEECDPDN 38
            +P  T T      C  Q    G+C+  ++C PDN
Sbjct: 1406 TPCSTVTCLYHSKCFPQADGTGVCICLDQCPPDN 1439


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 7    SSPLLTQ----TPFSEEDCIRQGGICVRTEECDPD-----NISTISQFLCPNQAHLGVAC 57
            + PLLT+     P + E  +  GGI +    C+P+      + T S  +CP+ ++ G  C
Sbjct: 1229 TEPLLTKLPSDVPMAVEIILHDGGISLLANPCEPNPCQHGGVCTESGCMCPS-SYNGTYC 1287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.135    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,679
Number of Sequences: 59808
Number of extensions: 80271
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 8
length of query: 66
length of database: 16,821,457
effective HSP length: 45
effective length of query: 21
effective length of database: 14,130,097
effective search space: 296732037
effective search space used: 296732037
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)