Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000561-TA|BGIBMGA000561-PA|undefined
         (66 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035009-1|AAH35009.1|  737|Homo sapiens delta/notch-like EGF re...    27   7.2  
AY358891-1|AAQ89250.1|  737|Homo sapiens QPRR262 protein.              27   7.2  
AF442487-1|AAM21557.1|  737|Homo sapiens delta-notch-like EGF re...    27   7.2  
AC093384-1|AAY14680.1|   92|Homo sapiens unknown protein.              27   7.2  

>BC035009-1|AAH35009.1|  737|Homo sapiens delta/notch-like EGF
          repeat containing protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 1  MAVTVCSSPLLTQTPFSEEDCIRQGGICVRTEECDPDNISTISQ--FLCPNQAHLGVACC 58
          +A  V ++PL    P + + C R GG+C    E DP + +   +  + C   A +  A C
Sbjct: 33 LANPVPAAPLSAPGPCAAQPC-RNGGVCTSRPEPDPQHPAPAGEPGYSCTCPAGISGANC 91


>AY358891-1|AAQ89250.1|  737|Homo sapiens QPRR262 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 1  MAVTVCSSPLLTQTPFSEEDCIRQGGICVRTEECDPDNISTISQ--FLCPNQAHLGVACC 58
          +A  V ++PL    P + + C R GG+C    E DP + +   +  + C   A +  A C
Sbjct: 33 LANPVPAAPLSAPGPCAAQPC-RNGGVCTSRPEPDPQHPAPAGEPGYSCTCPAGISGANC 91


>AF442487-1|AAM21557.1|  737|Homo sapiens delta-notch-like EGF
          repeat-containing transmembrane protein protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 1  MAVTVCSSPLLTQTPFSEEDCIRQGGICVRTEECDPDNISTISQ--FLCPNQAHLGVACC 58
          +A  V ++PL    P + + C R GG+C    E DP + +   +  + C   A +  A C
Sbjct: 33 LANPVPAAPLSAPGPCAAQPC-RNGGVCTSRPEPDPQHPAPAGEPGYSCTCPAGISGANC 91


>AC093384-1|AAY14680.1|   92|Homo sapiens unknown protein.
          Length = 92

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 1  MAVTVCSSPLLTQTPFSEEDCIRQGGICVRTEECDPDNISTISQ--FLCPNQAHLGVACC 58
          +A  V ++PL    P + + C R GG+C    E DP + +   +  + C   A +  A C
Sbjct: 33 LANPVPAAPLSAPGPCAAQPC-RNGGVCTSRPEPDPQHPAPAGEPGYSCTCPAGISGANC 91


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.135    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,698,754
Number of Sequences: 224733
Number of extensions: 362516
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 4
length of query: 66
length of database: 73,234,838
effective HSP length: 45
effective length of query: 21
effective length of database: 63,121,853
effective search space: 1325558913
effective search space used: 1325558913
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)