GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000561-TA|BGIBMGA000561-PA|undefined
         (66 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   0.41 
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    23   3.8  
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    23   3.8  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    22   8.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    22   8.7  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 16   FSEEDCIRQGGICVRTEECDPDNISTISQFLCP 48
            FS  DC RQ  I +   E   D  ST+  F+CP
Sbjct: 1381 FSFVDCTRQITIYLAKTELLSDLYSTLLSFVCP 1413


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
          S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 23 RQGGICVRTEECDPDNISTISQFLC 47
          RQ  +CV  E CD +    + + LC
Sbjct: 63 RQAHLCVLCESCDQEAYVKLVEALC 87


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
          S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 23 RQGGICVRTEECDPDNISTISQFLC 47
          RQ  +CV  E CD +    + + LC
Sbjct: 60 RQAHLCVLCESCDQEAYVKLVEALC 84


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 1   MAVTVCSSPLLTQTPFSEEDCIRQ 24
           +A +VCS P   Q  FS  D +++
Sbjct: 466 LANSVCSGPTYWQDAFSLTDALKE 489


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 19   EDCIRQGGICVRTEECDPDNISTISQ 44
            E+C++   +    EE + DN++  S+
Sbjct: 1173 EECLKIRSVLAEFEEMETDNVNPYSE 1198


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,128
Number of Sequences: 5004
Number of extensions: 9672
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 2,362,478
effective HSP length: 46
effective length of query: 20
effective length of database: 2,132,294
effective search space: 42645880
effective search space used: 42645880
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)