GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000561-TA|BGIBMGA000561-PA|undefined
         (66 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0414 + 13650483-13651388,13651559-13651657                       29   0.62 
04_01_0600 + 7907142-7908047,7908218-7908316                           29   0.62 
04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017           29   0.62 
03_02_0313 - 7335268-7335614,7335688-7335808                           27   2.5  
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319...    25   5.7  
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           25   5.7  
06_03_0683 - 23490215-23490997                                         25   7.6  

>05_03_0414 + 13650483-13651388,13651559-13651657
          Length = 334

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 13 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVACCYVSNFSK 65
          + P ++   +R  G+ ++   CD + +  ++QFL P  A + + C     F K
Sbjct: 2  ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRK 54


>04_01_0600 + 7907142-7908047,7908218-7908316
          Length = 334

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 13 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVACCYVSNFSK 65
          + P ++   +R  G+ ++   CD + +  ++QFL P  A + + C     F K
Sbjct: 2  ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRK 54


>04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017
          Length = 277

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 13 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVACCYVSNFSK 65
          + P ++   +R  G+ ++   CD + +  ++QFL P  A + + C     F K
Sbjct: 2  ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRK 54


>03_02_0313 - 7335268-7335614,7335688-7335808
          Length = 155

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 45  FLCPNQAHLGVACCYVSNF 63
           F CP Q  + VACC + N+
Sbjct: 111 FPCPTQVDIVVACCIIHNW 129


>09_04_0139 +
           15030753-15031208,15031298-15031523,15031599-15031981,
           15032353-15032685,15032902-15033010,15033089-15033465
          Length = 627

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 45  FLCPNQAHLGVACCYVSNF 63
           FL P Q  + VACC + N+
Sbjct: 301 FLYPTQVDIVVACCIIQNW 319


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 37  DNISTISQFLCPNQAHLGVACCYVSNFSKL 66
           D   + SQ+L P   HLG+ACC ++   ++
Sbjct: 552 DGEDSPSQYL-PKIQHLGLACCNLTKLPRI 580


>06_03_0683 - 23490215-23490997
          Length = 260

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 26  GICVRTEECDPDNI 39
           G+C R +EC PD +
Sbjct: 230 GVCPRIDECSPDGV 243


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.135    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,106
Number of Sequences: 37544
Number of extensions: 65375
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 7
length of query: 66
length of database: 14,793,348
effective HSP length: 46
effective length of query: 20
effective length of database: 13,066,324
effective search space: 261326480
effective search space used: 261326480
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)