Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000561-TA|BGIBMGA000561-PA|undefined
(66 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19157-1|CAA79569.1| 1416|Caenorhabditis elegans Hypothetical pr... 27 1.6
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 27 2.1
Z80216-6|CAB02285.2| 313|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 26 3.8
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 26 3.8
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 25 5.0
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 25 5.0
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 25 5.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 25 5.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 25 5.0
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z81589-7|CAB61028.1| 63|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z81579-2|CAB61019.1| 927|Caenorhabditis elegans Hypothetical pr... 25 8.7
X53245-1|CAA37335.1| 63|Caenorhabditis elegans metallothionein... 25 8.7
M92910-1|AAA28111.1| 63|Caenorhabditis elegans metallothionein... 25 8.7
M32387-1|AAA28118.1| 63|Caenorhabditis elegans protein ( C.ele... 25 8.7
M32386-1|AAA28117.1| 63|Caenorhabditis elegans protein ( C.ele... 25 8.7
D17365-1|BAA04181.1| 63|Caenorhabditis elegans metallothionein... 25 8.7
AF016852-1|AAB94551.1| 927|Caenorhabditis elegans HMP-1 protein. 25 8.7
>Z19157-1|CAA79569.1| 1416|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1416
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 25 GGICVRTEECDPDNISTISQFLCPNQAHLGVACCYV 60
GG C +C + + + LC N+A LG AC V
Sbjct: 1119 GGFCQEEIQCSSNQV--LHNGLCHNKAKLGEACLTV 1152
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 12 TQTPFSE-EDCIRQGGICVRTEECDPDNISTISQFL 46
T+TP +E ED +RQ V E C+ + + + Q L
Sbjct: 1991 TKTPLNEIEDAVRQASTVVSDELCNTEKLLSARQTL 2026
>Z80216-6|CAB02285.2| 313|Caenorhabditis elegans Hypothetical
protein F10G8.6 protein.
Length = 313
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 10 LLTQTP--FSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAH 52
L+ TP S D ++ CV+T+ + +++F+CPN AH
Sbjct: 201 LIVSTPQEVSLLDVRKEVSFCVKTKVPILGVVENMARFVCPNCAH 245
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 15 PFSEEDCIRQGGICVRTEECDPDNISTISQFLCP 48
P S CI Q +C +C + +S S CP
Sbjct: 2880 PCSNGHCINQTKVCDGHNDCHDEQVSDESLATCP 2913
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 15 PFSEEDCIRQGGICVRTEECDPDNISTISQFLCP 48
P S CI Q +C +C + +S S CP
Sbjct: 2880 PCSNGHCINQTKVCDGHNDCHDEQVSDESLATCP 2913
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 9 PLLTQTPFSEEDCIRQGGICVRTEECDPDNIS 40
PL + +DC R GGIC E +PD+ +
Sbjct: 1277 PLQNECALGIDDCARDGGIC----EDNPDSFT 1304
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 9 PLLTQTPFSEEDCIRQGGICVRTEECDPDNIS 40
PL + +DC R GGIC E +PD+ +
Sbjct: 1861 PLQNECALGIDDCARDGGIC----EDNPDSFT 1888
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 9 PLLTQTPFSEEDCIRQGGICVRTEECDPDNIS 40
PL + +DC R GGIC E +PD+ +
Sbjct: 1277 PLQNECALGIDDCARDGGIC----EDNPDSFT 1304
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 9 PLLTQTPFSEEDCIRQGGICVRTEECDPDNIS 40
PL + +DC R GGIC E +PD+ +
Sbjct: 1861 PLQNECALGIDDCARDGGIC----EDNPDSFT 1888
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 9 PLLTQTPFSEEDCIRQGGICVRTEECDPDNIS 40
PL + +DC R GGIC E +PD+ +
Sbjct: 1861 PLQNECALGIDDCARDGGIC----EDNPDSFT 1888
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 24 QGGICVRTEECDPDNISTISQFLCPNQ 50
+GG+C +ECD S +C N+
Sbjct: 1754 EGGVCTDIDECDRGMAGCDSMAMCINR 1780
>Z81589-7|CAB61028.1| 63|Caenorhabditis elegans Hypothetical
protein T08G5.10 protein.
Length = 63
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 20 DCIRQGGIC-VRTEECDPDNISTISQFLCPNQAHLGVACC 58
DC Q C T++CD + Q+ CP + CC
Sbjct: 6 DCKNQNCSCNTGTKDCDCSDAKCCEQYCCPTASE--KKCC 43
>Z81579-2|CAB61019.1| 927|Caenorhabditis elegans Hypothetical
protein R13H4.4 protein.
Length = 927
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 37 DNISTISQFLCPNQAHLGVAC 57
DNI+T+ FL ++AH+ C
Sbjct: 497 DNITTLDDFLAVSEAHIVEDC 517
>X53245-1|CAA37335.1| 63|Caenorhabditis elegans
metallothionein-II protein.
Length = 63
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 20 DCIRQGGIC-VRTEECDPDNISTISQFLCPNQAHLGVACC 58
DC Q C T++CD + Q+ CP + CC
Sbjct: 6 DCKNQNCSCNTGTKDCDCSDAKCCEQYCCPTASE--KKCC 43
>M92910-1|AAA28111.1| 63|Caenorhabditis elegans
metallothionein-2 protein.
Length = 63
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 20 DCIRQGGIC-VRTEECDPDNISTISQFLCPNQAHLGVACC 58
DC Q C T++CD + Q+ CP + CC
Sbjct: 6 DCKNQNCSCNTGTKDCDCSDAKCCEQYCCPTASE--KKCC 43
>M32387-1|AAA28118.1| 63|Caenorhabditis elegans protein (
C.elegans metallothionein-like protein (MT-Ce) mRNA,
clone MTCe-2, complete cds.).
Length = 63
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 20 DCIRQGGIC-VRTEECDPDNISTISQFLCPNQAHLGVACC 58
DC Q C T++CD + Q+ CP + CC
Sbjct: 6 DCKNQNCSCNTGTKDCDCSDAKCCEQYCCPTASE--KKCC 43
>M32386-1|AAA28117.1| 63|Caenorhabditis elegans protein (
C.elegans metallothionein-like protein (MT-Ce) mRNA,
clone MTCe-1, complete cds.).
Length = 63
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 20 DCIRQGGIC-VRTEECDPDNISTISQFLCPNQAHLGVACC 58
DC Q C T++CD + Q+ CP + CC
Sbjct: 6 DCKNQNCSCNTGTKDCDCSDAKCCEQYCCPTASE--KKCC 43
>D17365-1|BAA04181.1| 63|Caenorhabditis elegans
metallothionein-II protein.
Length = 63
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 20 DCIRQGGIC-VRTEECDPDNISTISQFLCPNQAHLGVACC 58
DC Q C T++CD + Q+ CP + CC
Sbjct: 6 DCKNQNCSCNTGTKDCDCSDAKCCEQYCCPTASE--KKCC 43
>AF016852-1|AAB94551.1| 927|Caenorhabditis elegans HMP-1 protein.
Length = 927
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 37 DNISTISQFLCPNQAHLGVAC 57
DNI+T+ FL ++AH+ C
Sbjct: 497 DNITTLDDFLAVSEAHIVEDC 517
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.135 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,841
Number of Sequences: 27539
Number of extensions: 62654
Number of successful extensions: 106
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 21
length of query: 66
length of database: 12,573,161
effective HSP length: 46
effective length of query: 20
effective length of database: 11,306,367
effective search space: 226127340
effective search space used: 226127340
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)
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