GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000561-TA|BGIBMGA000561-PA|undefined
         (66 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    19   6.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   8.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    18   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 44  QFLCPNQAHLGVACCYVSNF 63
           QFLC  +AH   A C+  +F
Sbjct: 734 QFLCRYEAHC-FALCHCCDF 752


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 8/23 (34%), Positives = 8/23 (34%)

Query: 32   EECDPDNISTISQFLCPNQAHLG 54
            EE DP        F  P   H G
Sbjct: 1735 EEMDPSKAMQFQTFPHPGNGHSG 1757


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 15  PFSEEDCIRQGG 26
           PF E+ CI + G
Sbjct: 166 PFDEQSCIMKFG 177


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 2   AVTVCSSPLLTQTPF 16
           A+T+C   +L+ TP+
Sbjct: 276 AITICFLYVLSWTPY 290


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 11  LTQTPFSEEDCIRQGG 26
           +T  PF ++ CI + G
Sbjct: 155 VTYFPFDQQTCIMKFG 170


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 29  VRTEECDPDNISTISQFLCPNQAHL 53
           ++   C   N    +Q    NQAHL
Sbjct: 412 IKNTRCAKSNNQNNNQNKYKNQAHL 436


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,558
Number of Sequences: 429
Number of extensions: 492
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 140,377
effective HSP length: 44
effective length of query: 22
effective length of database: 121,501
effective search space:  2673022
effective search space used:  2673022
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)