Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000559-TA|BGIBMGA000559-PA|IPR000652|Triosephosphate
isomerase
         (174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...   167   6e-43
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    29   0.38 
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   2.0  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   2.0  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   4.7  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   8.2  

>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score =  167 bits (407), Expect = 6e-43
 Identities = 79/133 (59%), Positives = 95/133 (71%), Gaps = 1/133 (0%)

Query: 41  ALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGK 100
           ALE GL V+ACIGETL ERE+ +T  VV RQL A+   +   W  IV+AYEPVWAIGTGK
Sbjct: 116 ALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTGK 174

Query: 101 TATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGA 160
           TATP+QAQ+VH  +R W +  +  SV++ +R+ YGGSV   N KE     DIDGFLVGGA
Sbjct: 175 TATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGA 234

Query: 161 SLKPEFVEIVNAN 173
           SLKPEF  IVN +
Sbjct: 235 SLKPEFHNIVNVH 247



 Score = 34.3 bits (75), Expect = 0.010
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 1  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLD 33
          M RKF VGGN+KMNG    +  I+  L    L+
Sbjct: 1  MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLN 33


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 90  YEPVWAIGTGKT--ATPQQAQDVHHALRNWLSANVSGSVSDAVRI 132
           Y  +W++G       TP+  + VH  LR WL   V G   DA+ +
Sbjct: 172 YLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINM 216


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 16  DKNQINEIVNNLKKG-----PLDPNVEVAHALESGLKVIACIGETLEERESGKTEEV 67
           +KN   E+V  LK G     PL+ N E+ + + +  + +   GE  EERE  + E V
Sbjct: 158 EKNIEKELVKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEEREEAELEFV 214


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 127 SDAVRIQYGGSVTAANAKELASCKDIDGFLVG 158
           SD  R Q+G S+  +NAKEL     I G+  G
Sbjct: 259 SDLSRGQHGKSIILSNAKELYKSVGIRGYYRG 290


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 105 QQAQDVHHALRNWLSA 120
           +Q Q+ H  +RNWLS+
Sbjct: 186 KQTQETHERIRNWLSS 201


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 24  VNNLKKGPLDPNVEVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVS 77
           ++  +KGPL   V     LE    V+AC+   + E +S   +E+   QL  L+S
Sbjct: 685 IHGSRKGPLYETVPGLSHLEKVAAVVACL---INENKSDLLDELKV-QLNCLIS 734


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,483
Number of Sequences: 5004
Number of extensions: 28493
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 2,362,478
effective HSP length: 68
effective length of query: 106
effective length of database: 2,022,206
effective search space: 214353836
effective search space used: 214353836
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)