Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000559-TA|BGIBMGA000559-PA|IPR000652|Triosephosphate
isomerase
(174 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 194 2e-50
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 185 2e-47
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 178 2e-45
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 44 9e-05
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 31 0.51
01_06_0627 - 30705604-30706977 29 1.6
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 29 2.1
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396... 29 2.1
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 29 2.7
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413... 28 3.6
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 28 4.8
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 28 4.8
02_02_0127 - 7038149-7038292,7038380-7038697,7038781-7038879,703... 27 6.3
11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198 27 8.3
05_06_0148 + 25989595-25990956 27 8.3
03_02_0772 - 11051657-11052919 27 8.3
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 27 8.3
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 27 8.3
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 194 bits (474), Expect = 2e-50
Identities = 91/136 (66%), Positives = 110/136 (80%), Gaps = 1/136 (0%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
+VA+AL GLKVIAC+GETLE+RESG T +VV Q KA+ I D W N+V+AYEPVWAI
Sbjct: 105 KVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAI 163
Query: 97 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
GTGK ATP QAQ+VH LR WL+ANVS V+++ RI YGGSVT AN KELA+ D+DGFL
Sbjct: 164 GTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFL 223
Query: 157 VGGASLKPEFVEIVNA 172
VGGASLKPEF++I+N+
Sbjct: 224 VGGASLKPEFIDIINS 239
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 185 bits (451), Expect = 2e-47
Identities = 88/136 (64%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
++A+AL G+KVIACIGETLE+RE+G T EVV Q KA+ I D W N+VLAYEPVWAI
Sbjct: 114 KIAYALSQGIKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAI 172
Query: 97 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
GTGK ATP QAQ+VH LR WL NVS +V+++ RI Y GSV AN KELA+ D+DGFL
Sbjct: 173 GTGKVATPAQAQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFL 232
Query: 157 VGGASLKPEFVEIVNA 172
VGGASLKPEFV+I+ +
Sbjct: 233 VGGASLKPEFVDIIKS 248
Score = 35.9 bits (79), Expect = 0.018
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 3 RKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALES 44
RKF VGGNWK NG + +IV L + + P+ +V + S
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEV-PSEDVVEVVVS 44
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 178 bits (433), Expect = 2e-45
Identities = 85/137 (62%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
+ A+AL +KVIACIGE LEERE+GKT +V F+Q+KA +I + W ++V+AYEPVWAI
Sbjct: 161 KAAYALSQNVKVIACIGELLEEREAGKTFDVCFKQMKAFADSITN-WADVVIAYEPVWAI 219
Query: 97 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
GTGK ATP+QAQ+VH A+R+WL NVS V+ +RI YGGSV AAN ELA +DIDGFL
Sbjct: 220 GTGKVATPEQAQEVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFL 279
Query: 157 VGGASLK-PEFVEIVNA 172
VGGASLK P+F I+N+
Sbjct: 280 VGGASLKGPDFATIINS 296
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 4 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHA 41
KF VGGNWK NG K+ ++++V L L+P+V+V A
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVA 91
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 43.6 bits (98), Expect = 9e-05
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 108 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK 163
Q VH LR L+ NV ++ R S TA+N KELA D++GFLV GASLK
Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLVSGASLK 128
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 31.1 bits (67), Expect = 0.51
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 3 RKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALESGLKVIA 50
RKF + G NW ++ ++ + + LKKG PN+ + AL++ K +A
Sbjct: 116 RKFAIDGRANNWILHQLDGKLRQYKSKLKKGYYKPNLPMERALQTVPKTVA 166
>01_06_0627 - 30705604-30706977
Length = 457
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 92 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 147
PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 20 INEIVNNLKKGPLDPNVEVAHALESGLKVIACI--GETLEER----ESGKTEEVVFRQLK 73
+ E V + K P +PN +V AL +G V+ + G +R E T + +
Sbjct: 784 LKEAVKLVNKMPFEPNAKVWGALLNGAAVVGDVEFGRYAFDRLFVIEPKNTGNYIV--MA 841
Query: 74 ALVSAIGDKWENIVLAYEPVWAIGTGKTATPQ 105
L S G KWE +W +G K PQ
Sbjct: 842 NLYSNAG-KWEEAETIRSMLWGVGLEKEVPPQ 872
>01_04_0083 -
15838922-15839065,15839153-15839443,15839555-15839653,
15839733-15839825,15839913-15840116,15840209-15840459,
15841045-15841096,15841527-15841625,15842222-15842299
Length = 436
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 3 RKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALESGLKVIA 50
RKF + G NW ++ + + + LKKG PN+ + L++ K +A
Sbjct: 161 RKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPNLSMERVLQTMPKTVA 211
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 19 QINEIVNNLKKGPLDPNVEVAHALESGLKVIACIGETLEERE 60
Q+ + + NLKK D +V A + LK+IA I + EE +
Sbjct: 259 QLRDCLRNLKKNYKDDTTKVTRAFQILLKIIANIVKNPEEEK 300
>09_02_0088 +
4136698-4136857,4137530-4137558,4137992-4138954,
4138973-4139301,4139398-4139485,4139766-4139864,
4139935-4140245,4140532-4140685
Length = 710
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 115 RNWLSANV----SGSVSDAVRIQYGGSVT-AANAKELASCKDIDGFLVGGASLKPEFVEI 169
+NW + + SG + VR+ YGGSV +N+ + + GG KP F E+
Sbjct: 49 KNWQNGEIVGGHSGKMDRLVRLHYGGSVVEQSNSGSNFEGMSVKQLIFGG---KPSFEEL 105
Query: 170 V 170
V
Sbjct: 106 V 106
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 69 FRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATP 104
F+++K L + D+++ IV W+ G GK TP
Sbjct: 872 FKRMKYLSTQYADRFDLIVAFCPTGWSFGKGKKRTP 907
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/62 (22%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 52 IGETLEERESGKTEEVVFRQLKAL----VSAIGDKWENIVLAYEPVWAIGTGKTATPQQA 107
+G+ + ++ K+++++ R+L AL + + +K E VL + W + ++ P++A
Sbjct: 87 VGDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDEKDEPFVLDKDQCWVLADNQSLKPKEA 146
Query: 108 QD 109
+D
Sbjct: 147 RD 148
>02_02_0127 -
7038149-7038292,7038380-7038697,7038781-7038879,
7038958-7039050,7039138-7039341,7039435-7039525,
7039593-7039695,7039761-7039907,7040825-7040876,
7041003-7041138,7041846-7041911,7041981-7042045
Length = 505
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 3 RKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALESGLKVIA 50
RKF + G NW ++ + + + LKKG PN+ + L++ K +A
Sbjct: 221 RKFAIDGRANNWILHQLDGKWRQYKSKLKKGYYKPNLPMERVLQTVPKTVA 271
>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
Length = 546
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 56 LEERESGKTEEVVFRQLKALVSAIG 80
+EE E G EEV+ + K LV +G
Sbjct: 194 MEEEEGGDQEEVLLEEKKMLVDVVG 218
>05_06_0148 + 25989595-25990956
Length = 453
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 92 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 147
PV+ IG A+ HA WL A SV V + +G G+V+A KE+A
Sbjct: 218 PVYCIGPLIVKGEDAAKGERHACLAWLDAQPERSV---VFVSFGSMGAVSAEQLKEIA 272
>03_02_0772 - 11051657-11052919
Length = 420
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 98 TGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCK 150
+ + P + +HH L NV +D+ + + GG A LA K
Sbjct: 206 SSRVIRPPSDKTIHHLLHLHYECNVRNPAADSDKARNGGDAANGGASSLAIWK 258
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 1 MGRKFVVGGNWKMNGDKN-----QINEIVNNLKKG 30
+ ++F+ GGN +NGD + I E+V L+KG
Sbjct: 712 LAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 54 ETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAY 90
+T EE ++ K ++ F + +ALV+A +N+ LAY
Sbjct: 166 QTFEEADTNKDGKIDFEEWQALVNAHPCLLKNMTLAY 202
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,268,403
Number of Sequences: 37544
Number of extensions: 208460
Number of successful extensions: 383
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 20
length of query: 174
length of database: 14,793,348
effective HSP length: 77
effective length of query: 97
effective length of database: 11,902,460
effective search space: 1154538620
effective search space used: 1154538620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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