Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000559-TA|BGIBMGA000559-PA|IPR000652|Triosephosphate
isomerase
(174 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.) 199 9e-52
SB_12178| Best HMM Match : TIM (HMM E-Value=0) 121 3e-28
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_39017| Best HMM Match : Treacle (HMM E-Value=1.7) 30 1.2
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076) 28 3.7
SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10) 27 6.4
SB_17896| Best HMM Match : DUF1610 (HMM E-Value=3.1) 27 6.4
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 27 8.5
SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6) 27 8.5
SB_55934| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 199 bits (486), Expect = 9e-52
Identities = 95/136 (69%), Positives = 112/136 (82%), Gaps = 1/136 (0%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
+VAHAL + +KVIACIGE L ERE+GKT+EVVFRQ+KA+ I D W +V+AYEPVWAI
Sbjct: 263 KVAHALSANVKVIACIGELLSEREAGKTQEVVFRQIKAIADKISD-WSKVVIAYEPVWAI 321
Query: 97 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
GTGKTATPQQAQ+VH+ LR WL NVS V+++ RI YGGSV A N +ELA+ DIDGFL
Sbjct: 322 GTGKTATPQQAQEVHNQLRAWLKENVSVDVAESTRIIYGGSVNAKNCRELAAEGDIDGFL 381
Query: 157 VGGASLKPEFVEIVNA 172
VGGASLKPEFV+IVNA
Sbjct: 382 VGGASLKPEFVQIVNA 397
>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
Length = 203
Score = 121 bits (292), Expect = 3e-28
Identities = 61/138 (44%), Positives = 93/138 (67%), Gaps = 2/138 (1%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLK-ALVSAIGDKWENIVLAYEPVWA 95
+V AL + L+VI C GE+LE R++ V +Q+K +L ++ +N+V+AYEP+WA
Sbjct: 62 KVDAALVNNLQVIFCCGESLEIRDADGQNNFVEQQIKESLFHLSEEQMKNVVVAYEPIWA 121
Query: 96 IGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGF 155
IGTG+TA+ +QAQD+H +R+ L++ ++D I YGGS NA EL +C D+DG
Sbjct: 122 IGTGRTASSEQAQDIHAHIRSVLASKYGDDLADDTTILYGGSCKPGNADELFACPDVDGG 181
Query: 156 LVGGASLK-PEFVEIVNA 172
L+GGA+LK +F+ I+NA
Sbjct: 182 LIGGAALKAQDFLGIINA 199
>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 44.0 bits (99), Expect = 7e-05
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNV 36
MGR+F VGGNWK+NG + I E++ K LD +V
Sbjct: 1 MGRRFFVGGNWKLNGSRASIQELLEAWGKADLDKSV 36
>SB_39017| Best HMM Match : Treacle (HMM E-Value=1.7)
Length = 415
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 61 SGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSA 120
SG + E++ R+LKAL + K +N ++ E + + T K + L W
Sbjct: 144 SGLSSELLGRELKALADELAHKKKNQKMSEE--YYLNTDKNEVIALKKSALRELEGWKKE 201
Query: 121 NVSGS 125
++SGS
Sbjct: 202 DISGS 206
>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 114 LRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVG 158
LRN S V G D++ +Q+ G ++ C D +G +G
Sbjct: 791 LRNLTSGTVIGISDDSILVQFEGKGPVFVLRQTLQCNDDEGHCIG 835
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 15 GDKNQINEIVNNLKKGPLDPNVEVAHALESGLKVIACIGETLEE-----RESGKTEEVVF 69
G+ Q NE +N K + NVE+ H L K A + L+E R++ + +++
Sbjct: 974 GNLQQENEFLNESLKDTHERNVELEHELAKARKECASLRSQLDENNIRMRKATEEADILQ 1033
Query: 70 R---QLKALVSAI 79
R +L+AL+ A+
Sbjct: 1034 RRVTELQALIDAL 1046
>SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076)
Length = 178
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 93 VWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQY 134
VW G+ +T D + +R W +A + +SD + + +
Sbjct: 110 VWMAGSRRTGCENDNVDTNQVMRFWYNAETNELISDEIGVAF 151
>SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)
Length = 389
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 31 PLDPNVEVAHALESGLKVIACIGETLEERESGKTEEVV 68
P P+++ H++ C+G+ E ++SG+ EE++
Sbjct: 267 PRRPDMQSTHSVTPNSYCDFCLGDVSENKKSGRPEELL 304
>SB_17896| Best HMM Match : DUF1610 (HMM E-Value=3.1)
Length = 121
Score = 27.5 bits (58), Expect = 6.4
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 43 ESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTA 102
E G+ AC GE EE E+G EE +A K E+ A P ++ + TA
Sbjct: 31 EWGIPSPACTGEPGEEEEAGMEEEKETSPTQAAQGGKAIKLESGKKAATPTDSV-SELTA 89
Query: 103 TPQQAQDVHHAL-RNWLSANVSGSVSD 128
+Q Q AL R AN+ ++D
Sbjct: 90 ELKQLQLEEQALIRQQEEANLRQQIAD 116
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 102 ATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGF 155
A PQ+ +++HA++ W + +G V + V Y V +A +D F
Sbjct: 402 AVPQEITNIYHAVKEW---DNNGEVQEKVSTLYRSFVFKGSASPNVEIAGLDQF 452
>SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6)
Length = 917
Score = 27.1 bits (57), Expect = 8.5
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 33 DPNVEVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEP 92
DP+ VAH + + G+ E+ ++ K VV L A+++ + +W+ +
Sbjct: 770 DPDPSVAHRYRKQGRPVLVPGKRGEKVDAYKGT-VVEVPLDAVLNGLPLEWK--YAGWGT 826
Query: 93 VWAIGTGKTA-TPQQAQDVHHALRNWLSANVSGSVS 127
V + GKT TP++ + H+L W++ V S+S
Sbjct: 827 VHRV-QGKTIQTPRRLFIIDHSLEGWITNAVYTSIS 861
>SB_55934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 27.1 bits (57), Expect = 8.5
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 33 DPNVEVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEP 92
DP+ VAH + + G+ E+ ++ K VV L A+++ + +W+ +
Sbjct: 1020 DPDPSVAHRYRKQGRPVPVPGKRGEKVDAYKGT-VVEVPLDAVLNGLPLEWK--YAGWGT 1076
Query: 93 VWAIGTGKTA-TPQQAQDVHHALRNWLSANVSGSVS 127
V + GKT TP++ + H+L W+++ V VS
Sbjct: 1077 VHRV-QGKTIQTPRRLFIIDHSLEGWITSAVYTGVS 1111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.131 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,593,074
Number of Sequences: 59808
Number of extensions: 206382
Number of successful extensions: 332
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 14
length of query: 174
length of database: 16,821,457
effective HSP length: 77
effective length of query: 97
effective length of database: 12,216,241
effective search space: 1184975377
effective search space used: 1184975377
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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