Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000559-TA|BGIBMGA000559-PA|IPR000652|Triosephosphate
isomerase
(174 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-10|CAA19447.1| 247|Caenorhabditis elegans Hypothetical... 184 4e-47
U23081-1|AAA79846.1| 247|Caenorhabditis elegans triosephosphate... 181 2e-46
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 30 0.78
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 30 0.78
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 30 1.0
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p... 28 3.2
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z72512-3|CAA96665.2| 310|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 27 9.6
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 27 9.6
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 27 9.6
>AL023828-10|CAA19447.1| 247|Caenorhabditis elegans Hypothetical
protein Y17G7B.7 protein.
Length = 247
Score = 184 bits (447), Expect = 4e-47
Identities = 89/136 (65%), Positives = 109/136 (80%), Gaps = 1/136 (0%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
+ HALE+G+KV+ CIGE LEERE+G T++V FRQL+A+V G WENIV+AYEPVWAI
Sbjct: 111 KTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDK-GVSWENIVIAYEPVWAI 169
Query: 97 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
GTGKTA+ +QAQ+VH +R +L VS +V+DA RI YGGSVTA NA EL DIDGFL
Sbjct: 170 GTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFL 229
Query: 157 VGGASLKPEFVEIVNA 172
VGGASLKP+FV+I+NA
Sbjct: 230 VGGASLKPDFVKIINA 245
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHA 41
M RKF VGGNWKMNGD ++ IV L + +V+V A
Sbjct: 1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVA 41
>U23081-1|AAA79846.1| 247|Caenorhabditis elegans triosephosphate
isomerase protein.
Length = 247
Score = 181 bits (441), Expect = 2e-46
Identities = 87/136 (63%), Positives = 109/136 (80%), Gaps = 1/136 (0%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
+ HALE+G+KV+ CIGE LEERE+G T++V FRQL+A+V G WENIV+AYEPVWAI
Sbjct: 111 KTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDK-GVSWENIVIAYEPVWAI 169
Query: 97 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
GTGKTA+ +QAQ+VH +R +L VS +V+DA RI YGGSVTA NA ++ DIDGFL
Sbjct: 170 GTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAADVGKKPDIDGFL 229
Query: 157 VGGASLKPEFVEIVNA 172
VGGASLKP+FV+I+NA
Sbjct: 230 VGGASLKPDFVKIINA 245
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHA 41
M RKF VGGNWKMNGD ++ IV L + +V+V A
Sbjct: 1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVA 41
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 84 ENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSD--AVRIQYGGSVTAA 141
EN Y P W + K+ Q D AL +WLS+ +G + ++ YGG + +
Sbjct: 440 ENSRQVYIPSWFVVDSKSGMLQITLDELDALSSWLSSKDAGFDDNDRETKLNYGGMMLRS 499
Query: 142 NAKELASCK 150
+ CK
Sbjct: 500 LFERWPPCK 508
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 84 ENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSD--AVRIQYGGSVTAA 141
EN Y P W + K+ Q D AL +WLS+ +G + ++ YGG + +
Sbjct: 440 ENSRQVYIPSWFVVDSKSGMLQITLDELDALSSWLSSKDAGFDDNDRETKLNYGGMMLRS 499
Query: 142 NAKELASCK 150
+ CK
Sbjct: 500 LFERWPPCK 508
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 93 VWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGS 137
V+++ TG+ T AQ HH + ++++VS S SDA+R+ G S
Sbjct: 2612 VYSVKTGEIRTLSDAQHHHHHPTHSMTSSVSTS-SDALRMVRGSS 2655
>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 28.3 bits (60), Expect = 3.2
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 11 WKMNGDKNQINEIVNNLKKG---PLDPNVEV-AHALESGLKVIA--CIGETLEERESGKT 64
W + K EIV N+KKG P+ P + H + L + C E E+R T
Sbjct: 759 WDILDRKEDCEEIVYNVKKGGLFPIRPEIITDIHDVNPALIALVKDCWAEVPEDR---PT 815
Query: 65 EEVVFRQLKALVS 77
E + Q+K LVS
Sbjct: 816 AENICSQMKGLVS 828
>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 28.3 bits (60), Expect = 3.2
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 11 WKMNGDKNQINEIVNNLKKG---PLDPNVEV-AHALESGLKVIA--CIGETLEERESGKT 64
W + K EIV N+KKG P+ P + H + L + C E E+R T
Sbjct: 759 WDILDRKEDCEEIVYNVKKGGLFPIRPEIITDIHDVNPALIALVKDCWAEVPEDR---PT 815
Query: 65 EEVVFRQLKALVS 77
E + Q+K LVS
Sbjct: 816 AENICSQMKGLVS 828
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
protein F54F12.1 protein.
Length = 1217
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 60 ESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLS 119
+S ++ + + LKAL IG + L+Y+ + + +GK + Q V+H NW+
Sbjct: 181 QSIQSSQSLLPVLKALRKVIGSHVNGLELSYKYIAGLPSGKLDLEELIQAVYH---NWIK 237
Query: 120 ANV 122
+
Sbjct: 238 NRI 240
>Z72512-3|CAA96665.2| 310|Caenorhabditis elegans Hypothetical
protein R07B5.5 protein.
Length = 310
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 23 IVNNLKKGPLDPNVEVAHALESGLKVIAC 51
I +N+K PLDP+ +A+ GL +C
Sbjct: 232 ITSNMKNPPLDPDTVATYAVIPGLVSYSC 260
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 46 LKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATP 104
L+V C+ + + + + + L+ + W+++V Y+P A + TATP
Sbjct: 706 LRVFICVNSLQDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATP 764
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 46 LKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATP 104
L+V C+ + + + + + L+ + W+++V Y+P A + TATP
Sbjct: 809 LRVFICVNSLQDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATP 867
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 46 LKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATP 104
L+V C+ + + + + + L+ + W+++V Y+P A + TATP
Sbjct: 822 LRVFICVNSLQDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATP 880
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.313 0.131 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,161,941
Number of Sequences: 27539
Number of extensions: 158543
Number of successful extensions: 343
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 14
length of query: 174
length of database: 12,573,161
effective HSP length: 77
effective length of query: 97
effective length of database: 10,452,658
effective search space: 1013907826
effective search space used: 1013907826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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