GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000559-TA|BGIBMGA000559-PA|IPR000652|Triosephosphate
isomerase
         (174 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   219   1e-59
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   1.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   1.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   1.6  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   6.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  219 bits (535), Expect = 1e-59
 Identities = 104/138 (75%), Positives = 121/138 (87%), Gaps = 1/138 (0%)

Query: 37  EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
           +VAHALESGLKVIACIGE LEERE+GKT+EVVFRQ KA+ + I + W+N+V+AYEPVWAI
Sbjct: 111 KVAHALESGLKVIACIGEKLEEREAGKTDEVVFRQTKAIANKI-NSWDNVVVAYEPVWAI 169

Query: 97  GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
           GTGKTATPQQAQ+VH  LRNW S NV+ +V++ VRI YGGSVTA NAK+LA  KDIDGFL
Sbjct: 170 GTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETVRIIYGGSVTAGNAKDLAKEKDIDGFL 229

Query: 157 VGGASLKPEFVEIVNANQ 174
           VGGASLKP+FV+IVNA Q
Sbjct: 230 VGGASLKPDFVQIVNAKQ 247



 Score = 68.9 bits (161), Expect = 3e-14
 Identities = 31/44 (70%), Positives = 35/44 (79%)

Query: 1  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALES 44
          MGRKF VGGNWKMNG K++IN+IV  LKKGPLD NVEV   + S
Sbjct: 1  MGRKFFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPS 44


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 63  KTEEVVFRQLKALVSAIGDKWENIVLAYEP 92
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 63  KTEEVVFRQLKALVSAIGDKWENIVLAYEP 92
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 63  KTEEVVFRQLKALVSAIGDKWENIVLAYEP 92
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 16  DKNQINEIVNNLK 28
           D  Q+N +VNN K
Sbjct: 92  DSEQVNRLVNNCK 104


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 5   FVVGGNWKMNGDKNQINEIVNN 26
           F+  G W + G   + NEI  N
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYN 212


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,711
Number of Sequences: 429
Number of extensions: 1808
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 140,377
effective HSP length: 54
effective length of query: 120
effective length of database: 117,211
effective search space: 14065320
effective search space used: 14065320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)