Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000559-TA|BGIBMGA000559-PA|IPR000652|Triosephosphate
isomerase
(174 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55440.1 68416.m06157 triosephosphate isomerase, cytosolic, p... 180 5e-46
At2g21170.1 68415.m02511 triosephosphate isomerase, chloroplast,... 177 3e-45
At2g16750.1 68415.m01921 protein kinase family protein contains ... 31 0.43
At5g57390.1 68418.m07170 ovule development protein, putative sim... 28 4.0
At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containi... 27 5.3
At3g11490.1 68416.m01401 rac GTPase activating protein, putative... 27 5.3
At2g29060.1 68415.m03532 scarecrow transcription factor family p... 27 5.3
At3g24710.1 68416.m03102 hypothetical protein 27 7.0
At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containi... 27 7.0
At5g55520.1 68418.m06915 expressed protein weak similarity to ph... 27 9.2
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 9.2
At5g21222.1 68418.m02532 protein kinase family protein contains ... 27 9.2
At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put... 27 9.2
At1g01130.1 68414.m00016 expressed protein ; expression supporte... 27 9.2
>At3g55440.1 68416.m06157 triosephosphate isomerase, cytosolic,
putative strong similarity to triosephosphate isomerase,
cytosolic from Petunia hybrida [SP|P48495], from Coptis
japonica [SP|P21820]
Length = 254
Score = 180 bits (438), Expect = 5e-46
Identities = 84/136 (61%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
+VA+AL GLKVIAC+GETLEERE+G T +VV Q KA+ + + W N+V+AYEPVWAI
Sbjct: 113 KVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTN-WSNVVIAYEPVWAI 171
Query: 97 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
GTGK A+P QAQ+VH LR WL+ NVS V+ RI YGGSV N KEL D+DGFL
Sbjct: 172 GTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFL 231
Query: 157 VGGASLKPEFVEIVNA 172
VGGASLKPEF++I+ A
Sbjct: 232 VGGASLKPEFIDIIKA 247
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALES 44
M RKF VGGNWK NG ++ +IVN L + + P+ +V + S
Sbjct: 1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQV-PSQDVVEVVVS 43
>At2g21170.1 68415.m02511 triosephosphate isomerase, chloroplast,
putative similar to Triosephosphate isomerase,
chloroplast precursor: SP|P48496 from Spinacia oleracea,
SP|P46225 from Secale cereale
Length = 315
Score = 177 bits (432), Expect = 3e-45
Identities = 89/137 (64%), Positives = 103/137 (75%), Gaps = 2/137 (1%)
Query: 37 EVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAI 96
+ A+AL GL VIACIGE LEERE+GKT +V F QLKA A+ W+NIV+AYEPVWAI
Sbjct: 172 KAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAV-PSWDNIVVAYEPVWAI 230
Query: 97 GTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFL 156
GTGK A+PQQAQ+VH A+R WL NVS V+ RI YGGSV N+ ELA +DIDGFL
Sbjct: 231 GTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFL 290
Query: 157 VGGASLK-PEFVEIVNA 172
VGGASLK PEF IVN+
Sbjct: 291 VGGASLKGPEFATIVNS 307
Score = 41.5 bits (93), Expect = 3e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 4 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEV 38
KF VGGNWK NG K+ I +++++L L+ +V+V
Sbjct: 65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDV 99
>At2g16750.1 68415.m01921 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 617
Score = 31.1 bits (67), Expect = 0.43
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 18 NQINEIVNNLKKGPLDPNVEVAHAL--ESGLKVIACIGETLEERESGKTEEVVFRQLKAL 75
N + + N KG L+ ++ H L E LK+ +GE L+ + + V+ R +K+
Sbjct: 344 NDLISVYNLSSKGSLEETLQGKHVLRWEERLKIAIGLGEALDYLHNQCSNPVIHRDVKSS 403
Query: 76 VSAIGDKWE 84
+ D++E
Sbjct: 404 NVLLSDEFE 412
>At5g57390.1 68418.m07170 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 555
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 81 DKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDA 129
D + N A PV AI T T + + NW++ N+S S A
Sbjct: 492 DGYNNHSAASNPVSAIPLSSTTTMSNGNEGYGGNINWINNNISSSYQTA 540
>At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 574
Score = 27.5 bits (58), Expect = 5.3
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 23/153 (15%)
Query: 6 VVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALESGLKVIACIGETLEERESGKTE 65
V+ G W NG + + N + K + PN++ L G LE ++ K E
Sbjct: 405 VISG-WCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGY---------LEVKQPWKAE 454
Query: 66 EVVFRQLKALVSAIGDKWEN-IVLAYEPVWAIG-----TGKTATPQQAQDVHHA-LRNWL 118
EV+ ++ G K EN L W + + K + +D+ A L
Sbjct: 455 EVL-----QMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALKCKDIEIAKLEKLY 509
Query: 119 SANVSGSVSDAVRIQYG-GSVTAANAKELASCK 150
SGS + ++I G + A A L++CK
Sbjct: 510 QKQSSGSSFNLLQIPVGKRELPTAKAMNLSACK 542
>At3g11490.1 68416.m01401 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 GB:AAC62624
GI:3695059 [Lotus japonicus]; contains Pfam profile
PF00620: RhoGAP domain
Length = 435
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 7 VGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALESGLK 47
V G +++NG+ Q I L KG + N++V H L S +K
Sbjct: 173 VEGIFRINGENGQEEYIREELNKGIIPDNIDV-HCLASLIK 212
>At2g29060.1 68415.m03532 scarecrow transcription factor family
protein
Length = 1336
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 43 ESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAY 90
++G ++ C LE R G T ++ AL S++ D + + AY
Sbjct: 990 DAGQRLAHCFANALEARLQGSTGPMIQTYYNALTSSLKDTAADTIRAY 1037
>At3g24710.1 68416.m03102 hypothetical protein
Length = 126
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 48 VIACIGETLEERESGKTEEVVFRQLKALVSA 78
V++ +GE + E E+G ++EV R+LKAL A
Sbjct: 28 VMSALGEIVSE-ETGGSKEVASRRLKALEKA 57
>At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 562
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 15 GDKNQINEIVNNLKKGPLDPNVE----VAHALESGLKVIACIGETLEERESGKTEEVVF 69
GD ++NE++ +++ +PNV V H+L +V +G + +E G + F
Sbjct: 322 GDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKF 380
>At5g55520.1 68418.m06915 expressed protein weak similarity to
phragmoplast-associated kinesin-related protein 1
[Arabidopsis thaliana] GI:8745333; expression supported
by MPSS
Length = 802
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 7 VGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHALESGLKVIAC 51
V + K + E + + PL P +A +L+ GL +I C
Sbjct: 288 VAASTKFQASPRNVTESSSTGNRKPLSPTDSLAASLQRGLNIIDC 332
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 11 WKMNGDK-NQINEIVNNLKKGPLDPNVEVAHALESGLKVIACIGETLEERESGKTEEVVF 69
WK G N + N K+ P + + K + C + L +R SG++E+ VF
Sbjct: 304 WKRIGAYFNNSASLANLPKREPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVF 363
Query: 70 R 70
+
Sbjct: 364 Q 364
>At5g21222.1 68418.m02532 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 831
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 11 WKMNGDKNQINEIVNNLKKGPLDPNVEVAHALESG 45
W GD + EI ++ +G +DP++ L G
Sbjct: 611 WSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645
>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
putative similar to glycerol-3-phosphate dehydrogenase
GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
[GI:1020315], Rattus norvegicus [SP|P35571]; contains
Pfam profile PF01266 FAD dependent oxidoreductase
Length = 629
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 44 SGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKW 83
SG++ +A + T + ES + VVF + LV+ G KW
Sbjct: 401 SGIRPLA-MDPTAKSTESISRDHVVFEENPGLVTITGGKW 439
>At1g01130.1 68414.m00016 expressed protein ; expression supported
by MPSS
Length = 180
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 8 GGNWKMNGDKNQINEIVNNLKKGPLDPNVEVAHAL--ESGLKV 48
GG WK++G KN+ N+ +K + P E+ AL SG KV
Sbjct: 81 GGKWKVDGRKNK-NKKEKEKEKEEIIPFKEIIEALLGNSGDKV 122
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.131 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,178,026
Number of Sequences: 28952
Number of extensions: 163065
Number of successful extensions: 362
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 17
length of query: 174
length of database: 12,070,560
effective HSP length: 76
effective length of query: 98
effective length of database: 9,870,208
effective search space: 967280384
effective search space used: 967280384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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