Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000558-TA|BGIBMGA000558-PA|undefined
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0267 - 26784861-26784896,26785324-26785404,26785530-267857... 38 0.029
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202 33 0.63
10_01_0298 - 3094197-3094307,3095093-3095253,3095462-3095666,309... 33 0.83
04_04_1691 - 35393728-35394585 32 1.5
10_08_0986 + 22050631-22051224,22051493-22051703,22051791-220520... 32 1.9
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 31 2.5
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 31 2.5
03_05_1146 - 30735010-30735216,30735336-30735650,30740169-307401... 31 2.5
06_03_1489 + 30492702-30493760 31 3.4
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 31 3.4
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 31 4.4
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448... 31 4.4
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 30 5.9
06_03_1031 - 27018871-27018916,27018987-27019110,27019251-270193... 30 7.8
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 30 7.8
02_05_0458 + 29212123-29212403,29213748-29213772 30 7.8
>05_06_0267 -
26784861-26784896,26785324-26785404,26785530-26785702,
26785780-26785938,26786199-26786328,26786447-26786609,
26787027-26787109,26787605-26787664,26787819-26787940,
26789126-26789275,26789354-26789546,26790156-26790393,
26791240-26791320,26791403-26791647
Length = 637
Score = 37.9 bits (84), Expect = 0.029
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 575 SPSGNG-NYNFEQTQPLGTVTPMPFTIKESSPMHSYYSDMARKALHSHNLSVPQASNDNF 633
S +G G ++ ++ P +V P P + P S ++ HS LS S+
Sbjct: 65 SGAGFGLDWVWDWRNPNRSVPPPPTEDIPAVPGSSGVLPLSNLQRHSEKLSDTHGSDKED 124
Query: 634 QYVEAPVSTTTPYFSLLA---TTAVPPEKKDV-ETVDTVAFEQSQYQE-AKARQRSSNKE 688
+ V++ PYF+ L TA + K + +D VA Q Q E A + NK+
Sbjct: 125 EVVDSSDDDCDPYFNYLVDSFMTATKAQPKQLYGNIDLVAAAQRQSNEYASSALDYYNKD 184
Query: 689 DNSNVSHNSRPRKRIRALKLNTLPEENNK 717
+N+ + ++ I+ALK +T+ E+ K
Sbjct: 185 ENNKIQYS-----LIKALKSSTIREKGEK 208
>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
Length = 288
Score = 33.5 bits (73), Expect = 0.63
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 70 PSAKGAVAVPTNIALPAVASIVPLNSVEI-YEESPTRTP 107
PS++ AV +P + LPA S+ PL I ++ +PT TP
Sbjct: 179 PSSEEAVTLPNELDLPATPSLPPLIDAYIAFDSAPTTTP 217
>10_01_0298 -
3094197-3094307,3095093-3095253,3095462-3095666,
3096349-3096534,3096616-3096756,3096843-3096959,
3097046-3097456
Length = 443
Score = 33.1 bits (72), Expect = 0.83
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 125 YYGPTPTDWEDQEYDLVAPHEASDSSYLPTAFAEPPGPSIVPHNHAPKKVKVVKINETPR 184
YY D+ Q+ L AP+ D S L ++AEP G S + A +VK + + P
Sbjct: 239 YYNHACADYAKQK--LSAPNFKVDGSQLTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPE 296
Query: 185 KKIVRKNK 192
K K
Sbjct: 297 NASKEKIK 304
>04_04_1691 - 35393728-35394585
Length = 285
Score = 32.3 bits (70), Expect = 1.5
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 64 YAPAYMPSAKGAVAVPTNIALPAVASIVPLNSVEIYEESPTRTPGTSVTASKLLPLYRAR 123
Y PSA+G TN A A + S + + + K L YR R
Sbjct: 69 YKDRKYPSARGT-GTRTNRATAAGFWKATGRDKPVLSSSRSSSSPAVIGMRKTLVFYRGR 127
Query: 124 GYYGPTPTDWEDQEYDLVAPHEASDSS 150
G TDW EY LVA H+ D S
Sbjct: 128 APNG-CKTDWIIHEYRLVAHHQQPDGS 153
>10_08_0986 +
22050631-22051224,22051493-22051703,22051791-22052082,
22052415-22052780,22052878-22052955,22053099-22053327
Length = 589
Score = 31.9 bits (69), Expect = 1.9
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 581 NYNFEQTQPLGTVTPMPFTIKESSPMHSYYSDMARKALHSHNLSVPQASNDNFQYVEAPV 640
N +FE LG V P+ T K P H YSD + ++ P+ N N++ P
Sbjct: 45 NLHFETHHSLGGVNPLVMTDKVFEPCHIRYSDYTPCQDQNRAMNFPR-ENMNYRERHCPT 103
Query: 641 ST 642
T
Sbjct: 104 ET 105
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 31.5 bits (68), Expect = 2.5
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 674 QYQEAKARQRSSNKEDNSNVSHNSRPRKRIRALKLNTL-------PEENNKEKTNVGTIR 726
QYQ+A RQR++N ED+ N +N+ R+ + N L + K+KTN
Sbjct: 669 QYQQAAVRQRAANSEDHFNGCNNAIKRQGNHQSEGNNLSHRDEEPARQRKKQKTNARDAC 728
Query: 727 SKSN 730
++ N
Sbjct: 729 TQEN 732
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 31.5 bits (68), Expect = 2.5
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 139 DLVAPHEASDSSYLPTAFAEPPGPSIVPHNHAPKKVKVVKINETPRKKIVRKNKPKRLIV 198
D+ +A DS +PT PP P + P +H P+++ V K + + V P++L
Sbjct: 155 DVAKGKKAVDS--VPTELPLPPPPPLPPQDHIPERLAVEK-SPMDVEPAVASESPEQLQE 211
Query: 199 RGRPQ-LEEEHPVSVFHEQFYSELDGSGTIRKIKKPPRVEK 238
+ +EEE S S G+ + P R +K
Sbjct: 212 HAESRVMEEEEEYSTMRNISTSRWAGANDDEEEGAPHRKKK 252
>03_05_1146 -
30735010-30735216,30735336-30735650,30740169-30740191,
30740591-30740666,30740764-30740889,30740968-30741033,
30741296-30741539,30741639-30741691
Length = 369
Score = 31.5 bits (68), Expect = 2.5
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 521 TSEDKNINAPRTFSAKRGKKKSISTQNISFGGSGHQTTVDHWDDTDIASFPNEQ 574
T+ I + K+G ST S +GH T HWDD DI FP +
Sbjct: 244 TNRPMKIESDGNLDQKKGGASLDSTGRDSPKTTGHAGT-KHWDDWDIVGFPGAE 296
>06_03_1489 + 30492702-30493760
Length = 352
Score = 31.1 bits (67), Expect = 3.4
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Query: 603 SSPMHSYYSDMARKALHSHNLSVPQASNDNFQYVEA-PVSTTTPYFSLLATTAVPPEKKD 661
SSP S+ + + + N V A N + Y VST T SL ++ +P +
Sbjct: 153 SSPRISFTGPKRPRTIAAENGGVLDACNGSSPYPPTFEVSTITNGCSLGQSSELPVPFSE 212
Query: 662 VETVDTVAFEQSQYQEAKARQRSSNKEDNSNVSHNSRPRKRIRALKLNTLPEENNKEKTN 721
E +D + S + K+R N N+S + + + + L LN + N+K+
Sbjct: 213 HEGLDDDNKDSSGHDTTKSRAIVGNGVGAGNLSAGRKVKIKRKELLLN---QHNSKDTQE 269
Query: 722 VGTIRSKSNKLSY 734
I+ + + Y
Sbjct: 270 AKEIKPSIDSIRY 282
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 31.1 bits (67), Expect = 3.4
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 92 PLNSVEIYEESPTRTPGTSVTASKLLPLYRARGYYGPTPTDWEDQEY----DLVAPHEAS 147
P S I ++ R G+ T +LP + + + P DW+D+EY D V P E
Sbjct: 186 PDASYSILVDNRERESGSMYTDWDILPPRKIKDVHAKKPKDWDDREYIEDPDAVKP-EGY 244
Query: 148 DSSYLPTAFAEP 159
DS +P +P
Sbjct: 245 DS--IPKEIPDP 254
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 30.7 bits (66), Expect = 4.4
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 515 SSSNIVTSEDKNINAPRTFSAKRGKKKSISTQNISFGGSGHQTTVDHWDDTDIASFPNEQ 574
+++N+V S + + + A + + + GS W+D D P E
Sbjct: 875 AAANVVPSRQAHRSQQQHSQAASRRPVDHVREMVRKYGSRSAAAAQPWEDDDDDDIP-EW 933
Query: 575 SPSGNGNYNFEQTQPLGTVTPMPFTIKESSPMHSYYSDMARKALHSHNLSVPQASNDN 632
P+ N N +QT+ P+P MH+Y+ ++ H ++ A+ ++
Sbjct: 934 DPN-QSNLNLQQTRHAIPQPPLPPPGPVHQQMHAYHQQHQQQQQHYQSIQQYHATQES 990
>06_01_0617 -
4483517-4483978,4484093-4484490,4484814-4484898,
4485002-4485838
Length = 593
Score = 30.7 bits (66), Expect = 4.4
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 476 IHNYKPKTLTGQGFQKFAN--PLLNFKDNSFTSNYAFDTSASSSNIVTSEDKN 526
+ +Y+ T+TG+G + + N TSNY+FD S++ + VT + ++
Sbjct: 109 LSSYEIVTITGEGARGVCSRTSYSGLPQNRSTSNYSFDISSNGNGAVTEDSQS 161
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 30.3 bits (65), Expect = 5.9
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 577 SGNGNYNFEQTQPLGTVTPMPFTIKESSPMHSYYSDMARKALHSHNLSVPQASNDNFQYV 636
SG + + T P ++ + F +SP S + +A L + +LS P A+ +
Sbjct: 41 SGTSSSSSTSTSPPLSLASLTFLSSAASPSSSIFPRLAAAGLPASSLSAPLAA--SLSSA 98
Query: 637 EAPVSTTTPYFSLLATTAVP 656
P+ Y LL A P
Sbjct: 99 HHPLPAAVAYLRLLLAPASP 118
>06_03_1031 -
27018871-27018916,27018987-27019110,27019251-27019311,
27019466-27019558,27019663-27020016
Length = 225
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 65 APAYMPSAKGAVAVPTNIALPAVASIVPLNSVEIYEESPTRTPGTSVTASKLLPLYRAR 123
AP+ +A A A T L + +P SV++ SP+R G +V A P+ R
Sbjct: 2 APSAAAAAAAAAAAATASPLSRLLLSLPNPSVKLPVSSPSRNAGAAVAAKNSTPVVALR 60
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 672 QSQYQEAKARQRSSNKEDNSNVSHNSRPRKRIRALKLNTLPEENNKEKT-NVGTIRSKSN 730
QS+ +EAK R+ + K D ++ + R I ++ ++ E +N+EK + G + N
Sbjct: 148 QSEEEEAKKREEEAKKRDEASKVEDCSIRNCITVVE--SMEELSNEEKVKSFGVFKDVQN 205
Query: 731 KLSYLLESPAT 741
+ ++ P T
Sbjct: 206 REIFMSAGPMT 216
>02_05_0458 + 29212123-29212403,29213748-29213772
Length = 101
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 660 KDVETVDTVAFEQ-SQYQEAKARQRSSNKEDNSNVSHNSRPRKR 702
KDV+ +D+ Q S Y + A SS+ NS S N R+R
Sbjct: 53 KDVDRIDSTGGHQGSHYNSSNASSSSSSSSSNSRGSANEDQRRR 96
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,075,321
Number of Sequences: 37544
Number of extensions: 1059485
Number of successful extensions: 2206
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2199
Number of HSP's gapped (non-prelim): 19
length of query: 751
length of database: 14,793,348
effective HSP length: 88
effective length of query: 663
effective length of database: 11,489,476
effective search space: 7617522588
effective search space used: 7617522588
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)
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