Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000557-TA|BGIBMGA000557-PA|undefined
         (412 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB027443-1|BAB18260.1|  219|Homo sapiens anti HBs antibody heavy...    32   4.3  
BC063855-1|AAH63855.1| 1105|Homo sapiens ATF7IP protein protein.       31   7.4  
BC037312-1|AAH37312.1|  517|Homo sapiens ATF7IP protein protein.       31   7.4  
AY337596-1|AAQ92978.1| 1270|Homo sapiens SETDB1-associated prote...    31   7.4  
AF425650-1|AAO91864.1| 1270|Homo sapiens MBD1-containing chromat...    31   7.4  

>AB027443-1|BAB18260.1|  219|Homo sapiens anti HBs antibody
           heavy-chain Fab fragment protein.
          Length = 219

 Score = 31.9 bits (69), Expect = 4.3
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 253 TENGDDSNDDVFTSVNSLQQSFPATYGYIRGAAGV-HDPFAE--LTPRDTAQTNSPDPFS 309
           T + D++ + ++  +NSL+    A Y   RG  G   DP+ +  L    +A T  P  F 
Sbjct: 69  TISRDNAKNSLYLQMNSLRAEDTAVYFCARGTVGYWFDPWGQGTLVTVSSASTKGPSVFP 128

Query: 310 AGAPPAVLFASGESYEGNVPIDHFTSSAAAG-NVG-LSSGESADQFPVTFQA 359
             AP +   + G +  G +  D+F        N G L+SG     FP   Q+
Sbjct: 129 L-APSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG--VHTFPAVLQS 177


>BC063855-1|AAH63855.1| 1105|Homo sapiens ATF7IP protein protein.
          Length = 1105

 Score = 31.1 bits (67), Expect = 7.4
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 289 DPFAELTPRDTAQTNSPDPFSAGAPPAVLFASGESYEGN-VPIDHFTSSAAAGNVGLSSG 347
           +P ++L     +   +P    AG P + + ASG+S  G+    +  +S AA+G+      
Sbjct: 120 EPVSKLPAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDA 179

Query: 348 ESADQFPVTFQAEDGT 363
            S D  P    + D T
Sbjct: 180 PSGDVSPGDATSGDAT 195


>BC037312-1|AAH37312.1|  517|Homo sapiens ATF7IP protein protein.
          Length = 517

 Score = 31.1 bits (67), Expect = 7.4
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 289 DPFAELTPRDTAQTNSPDPFSAGAPPAVLFASGESYEGN-VPIDHFTSSAAAGNVGLSSG 347
           +P ++L     +   +P    AG P + + ASG+S  G+    +  +S AA+G+      
Sbjct: 120 EPVSKLPAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDA 179

Query: 348 ESADQFPVTFQAEDGT 363
            S D  P    + D T
Sbjct: 180 PSGDVSPGDATSGDAT 195


>AY337596-1|AAQ92978.1| 1270|Homo sapiens SETDB1-associated protein
           protein.
          Length = 1270

 Score = 31.1 bits (67), Expect = 7.4
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 289 DPFAELTPRDTAQTNSPDPFSAGAPPAVLFASGESYEGN-VPIDHFTSSAAAGNVGLSSG 347
           +P ++L     +   +P    AG P + + ASG+S  G+    +  +S AA+G+      
Sbjct: 120 EPVSKLPAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDA 179

Query: 348 ESADQFPVTFQAEDGT 363
            S D  P    + D T
Sbjct: 180 PSGDVSPGDATSGDAT 195


>AF425650-1|AAO91864.1| 1270|Homo sapiens MBD1-containing chromatin
           associated factor protein.
          Length = 1270

 Score = 31.1 bits (67), Expect = 7.4
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 289 DPFAELTPRDTAQTNSPDPFSAGAPPAVLFASGESYEGN-VPIDHFTSSAAAGNVGLSSG 347
           +P ++L     +   +P    AG P + + ASG+S  G+    +  +S AA+G+      
Sbjct: 120 EPVSKLPAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDA 179

Query: 348 ESADQFPVTFQAEDGT 363
            S D  P    + D T
Sbjct: 180 PSGDVSPGDATSGDAT 195


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,006,356
Number of Sequences: 224733
Number of extensions: 1896901
Number of successful extensions: 6069
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6069
Number of HSP's gapped (non-prelim): 5
length of query: 412
length of database: 73,234,838
effective HSP length: 92
effective length of query: 320
effective length of database: 52,559,402
effective search space: 16819008640
effective search space used: 16819008640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 66 (30.7 bits)