GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000557-TA|BGIBMGA000557-PA|undefined
         (412 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    27   0.32 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    27   0.32 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   3.0  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 190 ITGILVTTVILAIMVTTDILATMDTAITTTNRLHFITSRRQFHP 233
           I G L+ T++ A+ V   +    D A TT      ++  RQF P
Sbjct: 352 INGTLLHTIVGAVTVYLIMFIQFDIATTTKGAAPAVSKARQFLP 395


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 190 ITGILVTTVILAIMVTTDILATMDTAITTTNRLHFITSRRQFHP 233
           I G L+ T++ A+ V   +    D A TT      ++  RQF P
Sbjct: 177 INGTLLHTIVGAVTVYLIMFIQFDIATTTKGAAPAVSKARQFLP 220


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 257 DDSNDDVFTSVNSLQQSFPATYGYIRGAAGV-HDPFAELTPRDTAQTNSPDPFSAGAPPA 315
           D  N D F S +++ Q+ P+  G  R ++GV    +  L  R++A        S  +P  
Sbjct: 48  DFDNSDFFQSEHAVIQTHPSIGGGPRFSSGVGRKAWKHLDFRNSATAELLKNPSLSSPDE 107

Query: 316 VLFASGESYEGNVPIDHFT 334
              A  E     +   HFT
Sbjct: 108 CARACREGEPPRICYYHFT 126


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 257 DDSNDDVFTSVNSLQQSFPATYGYIRGAAGV-HDPFAELTPRDTAQTNSPDPFSAGAPPA 315
           D  N D F S +++ Q+ P+  G  R ++GV    +  L  R++A        S  +P  
Sbjct: 48  DFDNSDFFQSEHAVIQTHPSIGGGPRFSSGVGRKAWKHLDFRNSATAELLKNPSLSSPDE 107

Query: 316 VLFASGESYEGNVPIDHFT 334
              A  E     +   HFT
Sbjct: 108 CARACREGEPPRICYYHFT 126


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 232 HPLKMTSDHPLPSIGSHGYEVTENGDDSNDDVFTSVN 268
           H L M  +H    I    +E  ++ DD +DD+  S N
Sbjct: 268 HTLSM--NHKYEKIDKEEHESMDDDDDDDDDMSNSEN 302


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,879
Number of Sequences: 317
Number of extensions: 2840
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 412
length of database: 114,650
effective HSP length: 58
effective length of query: 354
effective length of database: 96,264
effective search space: 34077456
effective search space used: 34077456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)