Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000557-TA|BGIBMGA000557-PA|undefined
(412 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical pr... 33 0.37
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 30 2.6
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 4.6
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 4.6
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 29 4.6
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 29 4.6
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 6.0
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 29 8.0
Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical pr... 29 8.0
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 29 8.0
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 29 8.0
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 29 8.0
>Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical
protein T22G5.5 protein.
Length = 512
Score = 33.1 bits (72), Expect = 0.37
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 217 TTTNRLHFITSRRQFHP-LKMTSDHPLPSIGSHGYEVTENGDDSNDDVFTSVNSLQQSFP 275
T N FI +++++ L + H + ++G G V E + D+ + +L +SF
Sbjct: 289 TIVNLPAFIAVKKKYNCYLFLDEAHSIGAVGPSGRGVAEYWGCNPRDIDIMMGTLTKSFA 348
Query: 276 ATYGYIRGAAGVHDPFAELTPRDTAQTNSPDPFSAGAPPAVLFASGE 322
+ GY+ G+ V D + P A AVL SG+
Sbjct: 349 SAGGYMGGSKKVIDHIRRYSAGTCYGVTMSPPLIAQVERAVLIMSGK 395
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 30.3 bits (65), Expect = 2.6
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 320 SGESYEGNVPIDHFTSSAAAGNVGLS--SGESADQFPVTFQAEDGTPTSFAGAVGGISGF 377
+GE +EG VPI + A + S + +S Q P +G+ T + + GF
Sbjct: 175 NGEQFEGGVPIRFLGPNTTAASTAESAFNAKSGSQKPQPPTTANGSSTKY-NKISDDEGF 233
Query: 378 DAGDR 382
D+ DR
Sbjct: 234 DSQDR 238
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 29.5 bits (63), Expect = 4.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 171 SMAITDITTSIMAITKIMGITGILVTTVILAIMVTTDILATMDTAITTT 219
++A T TSI+ T + T + TTV+ + TT + TA TTT
Sbjct: 252 TIASTSTVTSIVTSTTVTSTT-VPTTTVVTTVPTTTATSTSTSTASTTT 299
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 29.5 bits (63), Expect = 4.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 171 SMAITDITTSIMAITKIMGITGILVTTVILAIMVTTDILATMDTAITTT 219
++A T TSI+ T + T + TTV+ + TT + TA TTT
Sbjct: 234 TIASTSTVTSIVTSTTVTSTT-VPTTTVVTTVPTTTATSTSTSTASTTT 281
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
exchange factorfor RAS protein.
Length = 1413
Score = 29.5 bits (63), Expect = 4.6
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 299 TAQTNSPDPFSAGAPPAVLFASGESYEGNVPIDHFTSSAAAGNVGLSSGESADQFPVTFQ 358
T T + P SAG PP L + + P+ + + N S SA QFPV ++
Sbjct: 1314 TTLTTTTTPSSAGGPPPKLHPRRMTQQPMSPLAKSPLTPSRDN----SSPSAFQFPVVYE 1369
Query: 359 AEDGTP 364
A P
Sbjct: 1370 ASTAPP 1375
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 29.5 bits (63), Expect = 4.6
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 299 TAQTNSPDPFSAGAPPAVLFASGESYEGNVPIDHFTSSAAAGNVGLSSGESADQFPVTFQ 358
T T + P SAG PP L + + P+ + + N S SA QFPV ++
Sbjct: 1314 TTLTTTTTPSSAGGPPPKLHPRRMTQQPMSPLAKSPLTPSRDN----SSPSAFQFPVVYE 1369
Query: 359 AEDGTP 364
A P
Sbjct: 1370 ASTAPP 1375
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.1 bits (62), Expect = 6.0
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 238 SDHPLPSIGSHGYEVTENGDDSNDDVFTSVNSLQQSFPATYGYIRGAAGVHDPFAELTPR 297
S +P+ GS G VT S+ TS +S QS P++ G++ A
Sbjct: 1545 SSSTVPNTGSTGSTVTNPSTSSS----TSGSSSTQSIPSSTAANTGSSTSGPTVATTQGS 1600
Query: 298 DTAQTNSPDPFSAGAPPAVLFASGESYEGNVPIDHFTSSAAAGNVGLSS 346
+ QTNS + A +S G+ + +F SS+ A V S+
Sbjct: 1601 SSTQTNSNTGSTTVATTVTQGSSTGGNSGSTTV-NFQSSSVASTVASST 1648
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 202 IMVTTDILATMDTAITTTNRLHFITSRRQFHPLKMTSDHPLPSIGSHGYEVTENGDDSND 261
++ T L + + T +++ H S+ H + PL + SHGY + +D
Sbjct: 349 VITTCSFLKYVPSYATESHQKHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSGYDDD 408
Query: 262 DVF 264
D++
Sbjct: 409 DIY 411
>Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical
protein T27F6.4 protein.
Length = 206
Score = 28.7 bits (61), Expect = 8.0
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 204 VTTDILATMDTAITTTNRLHFITSRRQFHPLKMTSDHPLP-SIGSHGYEVTENGDDSNDD 262
V T++ TA + +H + H L ++S P S S GYE D N D
Sbjct: 92 VVTNLKYRKPTANHHLDSVHSSSEHHHHHHLSLSSLTRRPGSPSSSGYETDSLVDQENCD 151
Query: 263 VFTSVNSLQQSF 274
VF+S+ + S+
Sbjct: 152 VFSSLFNSSLSY 163
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 202 IMVTTDILATMDTAITTTNRLHFITSRRQFHPLKMTSDHPLPSIGSHGYEVTENGDDSND 261
++ T L + + T +++ H S+ H + PL + SHGY + +D
Sbjct: 349 VITTCSFLKYVPSYATESHQKHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSGYDDD 408
Query: 262 DVF 264
D++
Sbjct: 409 DIY 411
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 287 VHDPFAELTPRDTAQTNSPDPFSAGAPPAVLFASGESYE 325
+H F+ L P +T P+P + P + S ES E
Sbjct: 203 MHQTFSSLAPLPGMETFMPNPLAMATTPGTMVTSAESEE 241
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 287 VHDPFAELTPRDTAQTNSPDPFSAGAPPAVLFASGESYE 325
+H F+ L P +T P+P + P + S ES E
Sbjct: 203 MHQTFSSLAPLPGMETFMPNPLAMATTPGTMVTSAESEE 241
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,094,283
Number of Sequences: 27539
Number of extensions: 314036
Number of successful extensions: 809
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 18
length of query: 412
length of database: 12,573,161
effective HSP length: 83
effective length of query: 329
effective length of database: 10,287,424
effective search space: 3384562496
effective search space used: 3384562496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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