GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000557-TA|BGIBMGA000557-PA|undefined
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    30   2.5  
At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein ...    30   3.2  
At4g03260.1 68417.m00445 leucine-rich repeat family protein cont...    30   3.2  
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein...    30   3.2  
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    30   3.2  
At1g72460.1 68414.m08379 leucine-rich repeat transmembrane prote...    29   4.3  
At2g36300.1 68415.m04455 integral membrane Yip1 family protein c...    29   5.7  

>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 320 SGESYEGNVPIDHFTSSAAAGNVGLSSGESADQFPVTFQAEDGTPTSFAGAVGG 373
           S + +E  + + +F++S+AAG  G+  G      P+  Q   G   S  G +GG
Sbjct: 16  SDDFFEQILGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGG 69


>At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 284

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 318 FASGESYEGNVPIDHFTSSAAAGNVGLS 345
           F +G+SY GNVP+  F  S     +GLS
Sbjct: 173 FKNGDSYAGNVPLKTFIVSCGIFMIGLS 200


>At4g03260.1 68417.m00445 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 677

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 223 HFITSRRQFHPLKMTSDHPLPSIGSHGYEVTENGDDSNDDVFTSVNSLQQ 272
           H I + +  H LK +  H    +   G + TENG D   D  TS NSL+Q
Sbjct: 76  HGIGTHQVLH-LKKSQSHG-NELYLDGRDATENGTDDASDRITSPNSLEQ 123


>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
           (NAC2) identical to AtNAC2 [Arabidopsis thaliana]
           GI:12060426; contains Pfam PF02365: No apical meristem
           (NAM) domain; similar to jasmonic acid 2 GB:AAF04915
           from [Lycopersicon esculentum]
          Length = 364

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 328 VPIDHFTSSAAAGNVGLSSGESADQFPVTFQAEDGTPTS-FAGAVGGISGFDAGDRSIID 386
           V ++H +SS       L        +PV  + +D +P+  F G  GG         S+++
Sbjct: 272 VGLNHASSSGPMMMANLKRTLPVPYWPVADEEQDASPSKRFHGVGGGGGDCSNMSSSMME 331

Query: 387 ETPVSVSREAGI 398
           ETP  + ++ G+
Sbjct: 332 ETPPLMQQQGGV 343


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 9/143 (6%)

Query: 266 SVNSLQQSFPATYGYIR-GAAGVHDPFAELTPRDTAQTNSPDPFSAGAP-PAVLFASGES 323
           +VNS   S  +TYG     +   H     +TP  T+ T +    SA    P    A+  S
Sbjct: 208 NVNSQIPSSQSTYGLTAPNSTANHITKPHITPAVTSSTTTRPQESAPVHNPQESSATFGS 267

Query: 324 YEGNVPIDHFTSS-----AAAGNVGLSSGESADQFPVTFQAEDGTPTSFAGAVGGISGFD 378
              NVP +          AA+GN   S     D F VT       PT  A    GIS   
Sbjct: 268 RVSNVPSNQLVPKDPKELAASGNGFTSDSLFGDVFSVTSTQPKQHPTGSASTT-GISSVT 326

Query: 379 AGDRSIIDETPVSVSREAGIQQR 401
            G  +   E   SV R++ I Q+
Sbjct: 327 TGTVA-GPEITQSVVRQSSIPQQ 348


>At1g72460.1 68414.m08379 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat (5 copies), PF00069 eukaryotic protein
           kinase domain
          Length = 644

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 317 LFASGESYEGNVPIDHFTSSAAAGNVGLSSGESADQFPVT 356
           L+ SG  + GN+P D+F +  +     LS+   +   P++
Sbjct: 118 LYISGNRFSGNIPSDYFETMVSLKKAWLSNNHFSGLIPIS 157


>At2g36300.1 68415.m04455 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 255

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 312 APPAVLFASGESYEG-NVPIDHFTSSAAAGNVGLSSGESADQFPV-TFQAEDGTPTS-FA 368
           A P V+F SG S  G NV    F ++        SS      F + +  A   TP   F 
Sbjct: 6   AVPPVVFPSGGSSGGANVQQRRFPATPFQPPRPSSSAIPFMSFDIGSAAASSATPAGPFG 65

Query: 369 GAVGGISGFDAGDRSIIDETPV 390
           G +   S F  G  S  DE P+
Sbjct: 66  GTIASSSSFGGGSASFEDEEPL 87


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,747,716
Number of Sequences: 28952
Number of extensions: 299181
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 9
length of query: 412
length of database: 12,070,560
effective HSP length: 83
effective length of query: 329
effective length of database: 9,667,544
effective search space: 3180621976
effective search space used: 3180621976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)