Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000556-TA|BGIBMGA000556-PA|undefined
         (166 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    23   0.99 
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    23   0.99 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   4.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   4.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.0  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 2   FRSGNVSGVYLQMFFLVSVGLVASSEAFFLKWGS 35
           F +GN+   Y + F++ +  +V +   FF  W +
Sbjct: 250 FTTGNIIATYDKQFYIHNALIVRALFLFFQLWAT 283


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 2   FRSGNVSGVYLQMFFLVSVGLVASSEAFFLKWGS 35
           F +GN+   Y + F++ +  +V +   FF  W +
Sbjct: 246 FTTGNIIATYDKQFYIHNALIVRALFLFFQLWAT 279


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 64  YTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPV 106
           Y       M+Q   P  QP +Q Q +    P    A A  +P+
Sbjct: 190 YGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTAAALPSPL 232


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 64  YTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPV 106
           Y       M+Q   P  QP +Q Q +    P    A A  +P+
Sbjct: 192 YGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTAAALPSPL 234


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/48 (27%), Positives = 17/48 (35%)

Query: 35  SEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQP 82
           S PS  T Q       SP   PA  Y     P+ +     +  P  +P
Sbjct: 66  SSPSSDTSQDLQHSYQSPQTQPARFYSTPIVPHFAYNHNPLTPPNSEP 113


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 67  YDSRKMYQMQAPQYQPELQMQQS 89
           YD+   YQ   PQ+    Q  Q+
Sbjct: 198 YDTESSYQFNDPQFNFNYQYNQA 220


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 67  YDSRKMYQMQAPQYQPELQMQQS 89
           YD+   YQ   PQ+    Q  Q+
Sbjct: 218 YDTESSYQFNDPQFNFNYQYNQA 240


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 46  WLQPMSPNISPAI 58
           WLQ + PN+ P +
Sbjct: 102 WLQNVEPNLRPKL 114


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 9   GVYLQMFFLVSVGLVASSE-AFFLKWG 34
           GVY  +FF+V V L+      +F K G
Sbjct: 285 GVYNTLFFIVYVSLLLGPHPTYFGKTG 311


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.127    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,921
Number of Sequences: 317
Number of extensions: 1863
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 166
length of database: 114,650
effective HSP length: 52
effective length of query: 114
effective length of database: 98,166
effective search space: 11190924
effective search space used: 11190924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)