Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000556-TA|BGIBMGA000556-PA|undefined
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    32   0.038
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    29   0.35 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.62 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   4.4  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   4.4  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   4.4  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   5.8  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.6  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 32.3 bits (70), Expect = 0.038
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 82  PELQMQQSMAPIPISIPAGASLTPVSLQH---VQLVPCMCPVAPEEAEKLQEQTGPGPYV 138
           P  +   SMAP+    P  +S  P ++     V  +P   P A   A      + P P V
Sbjct: 872 PMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKV 931

Query: 139 AQTYTPASYPVAQQVPVAQDS 159
            +TY P +    +  PV Q S
Sbjct: 932 GETYHPPTASGTRVPPVQQPS 952


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 63  TYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPVSL 108
           TYTP +S+ +Y  Q+   QP    +  ++ +  ++P G+  TP +L
Sbjct: 259 TYTPSNSQSIYSSQS---QPSPYSRPLLSSVHPNLPPGSQSTPANL 301


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 89   SMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTPASYP 148
            S AP P+  P+ A L PV +   +  P   P +   +      + P P+   + +P S  
Sbjct: 1214 STAP-PVPTPS-AGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSS 1271

Query: 149  VAQQVPVAQDSSKTTNK 165
            +A   P     S++ +K
Sbjct: 1272 MASAAPARTSVSRSKSK 1288


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 134  PGPYVAQTYTPASYPVAQQV-PVAQDSSKTTN 164
            P P  + T TP + P AQQ+ P  Q S+ ++N
Sbjct: 1260 PAPVNSATSTPVAAPTAQQIQPGKQASAVSSN 1291


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 38  SQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQ 79
           S P +Q     P + ++SP +    TY+P ++  +Y  ++P+
Sbjct: 653 SSPKRQSVPSTPKA-SLSPRVHKSMTYSPSEASPLYANKSPK 693


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 135 GPYVAQTYTPASYPVAQQVPVAQD 158
           GP +   Y P  YPV  Q P  Q+
Sbjct: 411 GPILQPGYVPQYYPVYHQTPYTQN 434


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 21 GLVASSEAFFLKWGSEPSQPTQQKTWLQPMSPNISPAIRY 60
          G+++  E F + +    + P+  KT+LQP +  + P+  Y
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWNDAVEPSTYY 94


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 80  YQPELQMQQSMAPIPISIPAG 100
           Y PE  MQQ +   P SIP+G
Sbjct: 409 YSPESLMQQPLTLSPSSIPSG 429


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 101 ASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTP 144
           A +  V +QH  +   +C   P+E      Q    P   +T TP
Sbjct: 418 AEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVAGKTVTP 461


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 40 PTQQKTWLQPMSPNISPAIRYQYTYTPYD 68
          PT ++  L  ++P+  PA +  Y+  PY+
Sbjct: 36 PTSKQAALSDITPDTPPAFKTPYSSLPYN 64


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 34  GSEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPI 93
           GS PS   Q++    P+ PN+   +    +Y+   S          Y     +  + A  
Sbjct: 127 GSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANA 186

Query: 94  PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGP 136
           P+ +P    ++  S      VP     A   A  +++   P P
Sbjct: 187 PLPVPPPRRVSQNSSYASGSVP--AATAASTASPVKKPPPPAP 227


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.127    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,057
Number of Sequences: 5004
Number of extensions: 33042
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 13
length of query: 166
length of database: 2,362,478
effective HSP length: 68
effective length of query: 98
effective length of database: 2,022,206
effective search space: 198176188
effective search space used: 198176188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)