Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000556-TA|BGIBMGA000556-PA|undefined
(166 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 37 0.010
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.029
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 31 0.36
SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0) 31 0.36
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009) 31 0.63
SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 29 1.5
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 29 1.5
SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_37588| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_9026| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.4) 29 2.6
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_42959| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 27 5.9
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14) 27 7.8
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 27 7.8
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 27 7.8
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 27 7.8
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 36.7 bits (81), Expect = 0.010
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 49 PMSPNISPAI-RYQYTYTPYD-SRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPV 106
P SP+ +PA Y T Y + Y +P Y P S +P PA S +P
Sbjct: 663 PASPSYTPASPSYTPTSPSYSPASPSYSPTSPSYSPASPSYTSASPS--YSPASPSYSPT 720
Query: 107 SLQHVQLVPCMCPVAPEEAEKLQEQTGPGPY---VAQTYTPASYPVAQQVP 154
S + +P P +P + T P + +YTPAS +P
Sbjct: 721 SPSYSPAIPSNSPASPSYSPASPSYTPASPSYTPASPSYTPASPSYTPTIP 771
Score = 30.3 bits (65), Expect = 0.84
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 49 PMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPVSL 108
P SP+ SPAI +P Y +P Y P P PA S TP S
Sbjct: 719 PTSPSYSPAIPSNSPASP-----SYSPASPSYTPAS---------PSYTPASPSYTPASP 764
Query: 109 QHVQLVPCMCPVAPEEAEKLQEQTGPGP---YVAQTYTPAS 146
+ +P P +P + + P + +Y+PAS
Sbjct: 765 SYTPTIPSYSPTSPSYSPTSPSYSPASPSYTSASPSYSPAS 805
>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 35.1 bits (77), Expect = 0.029
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 34 GSEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPI 93
G+ + PT TW Q ++ SP +R T P K P P + + P+
Sbjct: 186 GTSTAIPTPM-TW-QTLAAIPSPMVRQTSTAIPSPMAKETSTAMPS--PTTRQTSTAIPL 241
Query: 94 PISIPAGASLT-PVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTPASYPVAQQ 152
P+S A +T P+++Q +P P+A + + + P P QT T P+A+Q
Sbjct: 242 PMSRQISAVITSPMAMQTSTAIPS--PMAMQTSTAI-----PSPMAMQTSTAIPSPMARQ 294
Query: 153 VPVA 156
A
Sbjct: 295 TSTA 298
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 31.9 bits (69), Expect = 0.27
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 36 EPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDS-RKMYQMQAPQYQPELQMQQSMAP 92
+PS+P QQ QP P P ++ P R Q Q P +QP Q QQS P
Sbjct: 588 QPSRPGQQHQ--QPFRPEQQPQQPFRSVQPPQQPFRADQQTQQPFHQPGQQPQQSFRP 643
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 31.5 bits (68), Expect = 0.36
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 37 PSQPTQQKTW--LQPMSPNISPAI-RYQYTYTPYD-SRKMYQMQAPQYQPELQMQQSMAP 92
P+ P+ T P SP+ SP Y T Y S Y +P + L+ + P
Sbjct: 549 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSFHHNLR--PTPPP 606
Query: 93 IPISIPAGASLTPVSLQH-VQLVPCMCPVAPEEAEKLQEQTGP 134
+P+SIP TP LQ Q P P P Q P
Sbjct: 607 LPLSIPLLLQATPPHLQSTAQPRPTTVPPLPPTPPPRQSTPPP 649
>SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 704
Score = 31.5 bits (68), Expect = 0.36
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 23 VASSEAFFLKWGSEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQP 82
+ S E + L E P + +P SP + P + P S+ Y+ Q P+ P
Sbjct: 461 MGSKEGWVLGSYLEAKTPKVNQPHGKPGSPKVQPR-DLKPAPPPRPSQPYYRNQTPK--P 517
Query: 83 ELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEK---LQEQTGPG 135
+ + PIP S P A PV V L PVAP AE + + TG G
Sbjct: 518 K---RDKPVPIPRSAPKPAK--PVGRLDVTLFESKIPVAPPRAESKGYVPKDTGSG 568
>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
Length = 392
Score = 30.7 bits (66), Expect = 0.63
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Query: 48 QPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIP-ISIPAGASLTPV 106
+P P A Q P + Q QAP Q + + Q AP+P P P+
Sbjct: 180 RPPPPAEPQAPLPQLAPLPKQQAPLPQQQAPLPQQQAPLPQQQAPLPQQQAPLPQQHAPL 239
Query: 107 SLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTPASYPVA 150
Q L P+ P++A + P Y A+ P+A
Sbjct: 240 PQQQAPLPQQKAPL-PQQATTMYSAPLPTQTATYGYAQATVPMA 282
>SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 30.3 bits (65), Expect = 0.84
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 85 QMQQSMAPIPISIPAGASLTPVSLQHVQLVPCM---CPVAPEEAEKLQEQTGPGPYVAQT 141
Q+++ +PI I IPA S S QL P P +L T P P Q
Sbjct: 88 QLRRQPSPIRIRIPAAQSTEETSRNLAQLSLLQRRGHPPLPRLRLRLTRLTPPQPSPPQP 147
Query: 142 YTPASYPVAQQVPVAQDSSKTTN 164
P P QQ P Q + N
Sbjct: 148 PQPPPQPPDQQGPEVQSQMEADN 170
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 74 QMQAPQYQPELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTG 133
Q Q PQ P Q QQ P +IP T Q +Q P P+E ++ + T
Sbjct: 916 QQQQPQTMPTSQPQQLQEPSQETIP-----TQKPSQQLQQTQAQLPQQPQETQEQAQATP 970
Query: 134 PGPYVAQTYTPASYPVAQQVPVAQDSSK 161
Q A+ Q+ + Q +++
Sbjct: 971 QQQLATQDKQQATQGQEQETQLQQQATQ 998
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 39 QPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPI---PI 95
QPTQQ+ +IS + Q+ ++ ++Y QA Q+Q Q QQ ++P P
Sbjct: 494 QPTQQQ-----QQQHISRETQQQFHHS-----QVYS-QAQQHQLVSQQQQMLSPAQQSPT 542
Query: 96 SIPAGASLTPVSLQHVQLVPCMCPVAPEEA 125
PAG V Q P P P++A
Sbjct: 543 HAPAGPQHASVGTSMGQSQPTHAPAGPQQA 572
>SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.1 bits (62), Expect = 1.9
Identities = 29/110 (26%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 47 LQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPV 106
L P PN P T P +Q Q Y + Q Q + P P A TP
Sbjct: 177 LSPYQPNAMPTPPQGVTPAPLPP--YFQQQGYGYPQQPQPTQPVQPGQTQAPTAAQTTPA 234
Query: 107 SLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTPASYPVAQQVPVA 156
VQ P E AE+ + A+ + P A Q P A
Sbjct: 235 P---VQTTPAPGKTTTEAAEETTTEA-----AAEGAETTAAPAATQAPAA 276
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 56 PAIRYQYTYTPYDSRKMYQMQAPQYQP 82
P+ + YT TPY S + Q+Q Q QP
Sbjct: 1874 PSTQATYTTTPYQSMQQPQLQQQQQQP 1900
>SB_37588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 36 EPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPI 95
+ Q QQ+ LQ ++P + QY + + + Q++A Q Q L QQ+ + +
Sbjct: 31 QQQQQQQQQQQLQQQLSQMTPQQQQQYVMSQIAASQQQQLRA-QQQAALAAQQAHSQPAV 89
Query: 96 SIP 98
S+P
Sbjct: 90 SLP 92
>SB_9026| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.4)
Length = 195
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 76 QAPQYQPELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQT 132
QA Q + Q P PA + TP Q Q P P P++ + +QT
Sbjct: 136 QAHNNQSQAAAHQQTQAGPQQTPARSQQTPAGPQQTQAGPQQTPAGPQQTQAGPQQT 192
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 25 SSEAFFLKWGSEPSQPTQQKTWLQPMSPNISP--AIRYQYTYTPYDSRKMYQMQAPQYQP 82
S+++F ++ + P QP+ + T M P+++P + YQ Y P M+ QY P
Sbjct: 931 SNKSFSVESLTAPRQPSDRGTPPHAMDPSVTPYGGLYYQSKYPP----GMFGQARYQYPP 986
Query: 83 ELQ 85
+Q
Sbjct: 987 AMQ 989
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 27.9 bits (59), Expect = 4.5
Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 6/126 (4%)
Query: 25 SSEAFFLKWGSEPSQPTQQKTWLQPMSPNISP--AIRYQYTYTPYDSRKMYQMQAPQYQP 82
+S+A + +PS+ ++ KT + P A R P+ S M P P
Sbjct: 948 TSDAQKTEESDQPSKDSESKTVPDTVKAESMPVPASRQSKAPIPHPSPPMQ----PAKPP 1003
Query: 83 ELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTY 142
Q S+ P+P P G + PV + P P+ P P P +
Sbjct: 1004 RQHTQCSIDPVPHLKPPGPTEQPVPPKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPS 1063
Query: 143 TPASYP 148
P S P
Sbjct: 1064 PPPSEP 1069
>SB_42959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 40 PTQQKTWLQPMSPNISPAIRYQYT---YTPYDSRKMYQMQAPQYQPELQMQQSMAPIPI 95
P QQ + + P++P +P Q ++ YQ PQ+Q Q Q + +P+
Sbjct: 73 PLQQMSQMSPVTPQPAPQPTNQMPPQQANQFNQINQYQPATPQHQQGAQPQNPVQQVPL 131
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 58 IRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIP-ISIPAGASLTPVSLQHVQLVP- 115
I Y + P Y +P Y+ Q QQ+ A IP + +P ++ Q +P
Sbjct: 350 ILYGRSNIPMYQYPQYLQSSPYYKQYYQQQQARAMIPHLKVPQAQPQASLAQYQPQSLPQ 409
Query: 116 -CMCPVAPEEAEKLQEQT 132
+ V PE E +++T
Sbjct: 410 EAVDVVQPEADETTEDKT 427
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 37 PSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAP--QYQPELQMQQSMAP 92
P QP QQ+ Q P I + YQ + + ++M AP +QP QM + AP
Sbjct: 438 PMQPVQQQPSAQQPQPLIPGLVGYQ-SSVGHPVQQMPGQAAPTSAFQPSQQMLRQAAP 494
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 27.5 bits (58), Expect = 5.9
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 5/107 (4%)
Query: 36 EPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPI 95
+ QP QQ Q + Q M +P P Q+ PIP+
Sbjct: 305 QQQQPQQQHHQQQQQQQQQQQQLFMQGIQLSSTDTSQVNMMSPLSSPTQQVN----PIPL 360
Query: 96 SIPA-GASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQT 141
+ P A +LQ++Q + + PE + L G P VAQT
Sbjct: 361 NSPILPAPQQNNTLQNIQNLLTISSQNPEAMQMLLSGLGSQPQVAQT 407
>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
Length = 1085
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 82 PELQMQQSMAPIPISIPAGASLT-PVSLQHVQLVPCMCPVAPEEAEKLQEQTGP 134
P Q + P P +IP L P ++Q QL+PC + P++ E P
Sbjct: 981 PRTLPPQQLLPCPETIPPQQLLPCPETIQPQQLLPCPETIQPQQLLPCPETIPP 1034
>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 39 QPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIP 98
Q TQQ+ P P ++P + Q TY P ++ + ++ Q QQ + P+ + P
Sbjct: 418 QVTQQQPTQPPQLPTMAPQLTQQETYQPQVNQGVLVVEPT--QAVSTQQQVIQPVGPTGP 475
Query: 99 AG 100
G
Sbjct: 476 QG 477
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 27.1 bits (57), Expect = 7.8
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 86 MQQSMAPIPI-SIPAGASLTPVSLQ-HVQLVPCMCPVAP-------------EEAEKLQE 130
++Q MA + + SI A A+L P++ +VP PVAP ++A
Sbjct: 13 VEQGMASLDLKSITANAALNPLNTSLTAPVVPLPTPVAPPSTVPYTATPAPAQQAPHTTA 72
Query: 131 QTGPGPYVAQTYTPASYPVA 150
+ P PY + PASY A
Sbjct: 73 ASQPAPYTPASGQPASYTPA 92
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 76 QAPQYQPELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPG 135
Q+P P A S+ S P+ HV + P+ P AE E P
Sbjct: 1681 QSPTLSPSSSSSNLEAYFDKSVTTKVSFAPLEGHHVNSSDHLKPLEPSHAE---EPDDPT 1737
Query: 136 PYVAQTYTP 144
P VA P
Sbjct: 1738 PIVANVTVP 1746
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 27.1 bits (57), Expect = 7.8
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 82 PELQMQQSMAPIPISIPAGASL---TPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYV 138
P Q Q S AP P+ +PAG TP+ Q V P P APE + P
Sbjct: 76 PTPQTQASTAP-PL-VPAGVEAPTPTPMVAQSVAPTPPPPPRAPETPSQAPSPPPPPTSP 133
Query: 139 AQTYTPASYPVA 150
A P P+A
Sbjct: 134 ATRAPPPPPPIA 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.127 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,646,533
Number of Sequences: 59808
Number of extensions: 234841
Number of successful extensions: 872
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 37
length of query: 166
length of database: 16,821,457
effective HSP length: 77
effective length of query: 89
effective length of database: 12,216,241
effective search space: 1087245449
effective search space used: 1087245449
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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