GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000556-TA|BGIBMGA000556-PA|undefined
         (166 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.67 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.67 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   2.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   3.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 23  VASSEAFFLKWGSEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQY 80
           + S  +F   +    + P  Q T +Q + P +SP       Y  Y+   +    +PQY
Sbjct: 386 IGSGGSFPSLYPMATTSPQSQST-IQTLRPQVSPDRTSPMEYRLYNPALIQSQPSPQY 442


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 35   SEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQ 81
            ++  QP QQ+   Q   P        Q    P   ++  Q Q PQ Q
Sbjct: 1500 TQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQ 1546


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 52  PNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPI 95
           P I  ++   Y Y+ Y++   Y  +       + ++Q   P+PI
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPI 122


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 53  NISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPI 95
           ++S    Y   Y  Y++      +  QY   + ++Q   P+PI
Sbjct: 87  SLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPI 129


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 37  PSQPTQQKTWLQPMSPNISPAIR 59
           P   T Q+  LQ  S   SPAIR
Sbjct: 225 PQPLTGQQELLQDFSKRFSPAIR 247


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 42  QQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQ 88
           Q +  L PM   I P     ++Y     R  +   A    PEL++ Q
Sbjct: 117 QMEFQLYPMDIQICPIYIESFSYHKQKLRLRWGTGAVTVNPELKLLQ 163


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 124 EAEKLQEQTGPGPYVAQTYTPASYPVAQQV 153
           +AE  +   G     A T TP S PV   V
Sbjct: 34  KAETPEHLAGTSTTAAATPTPPSVPVGSAV 63


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.127    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,164
Number of Sequences: 429
Number of extensions: 2514
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 166
length of database: 140,377
effective HSP length: 53
effective length of query: 113
effective length of database: 117,640
effective search space: 13293320
effective search space used: 13293320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)