Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000556-TA|BGIBMGA000556-PA|undefined
(166 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 36 0.010
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 33 0.13
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 32 0.17
At1g50520.1 68414.m05667 cytochrome P450 family protein similar ... 30 0.69
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 30 0.91
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 1.2
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 29 1.2
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 29 1.2
At4g39680.1 68417.m05614 SAP domain-containing protein contains ... 29 1.6
At2g44690.1 68415.m05562 Rac-like GTP-binding protein (ARAC9) id... 29 1.6
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 29 2.1
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 29 2.1
At1g30570.1 68414.m03740 protein kinase family protein contains ... 29 2.1
At1g29240.1 68414.m03576 expressed protein contains Pfam profile... 28 2.8
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 28 3.7
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ... 28 3.7
At1g48450.1 68414.m05416 expressed protein 27 4.8
At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ... 27 6.4
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 6.4
At2g10070.2 68415.m01044 expressed protein very low similarity t... 27 6.4
At2g10070.1 68415.m01045 expressed protein very low similarity t... 27 6.4
At1g23000.1 68414.m02874 heavy-metal-associated domain-containin... 27 6.4
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family... 27 6.4
At4g31610.1 68417.m04490 transcriptional factor B3 family protei... 27 8.4
At3g17800.1 68416.m02270 expressed protein 27 8.4
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 27 8.4
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 27 8.4
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 36.3 bits (80), Expect = 0.010
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 35 SEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIP 94
SEP+Q + +PN+SP P S + Q+ P E S AP P
Sbjct: 697 SEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTP--SSESNQSPSQAPTP 754
Query: 95 ISIPAGASLTPVSLQHVQLVPCMCPV-APEEAEKLQEQTGPGPYVAQTYTPASYP 148
I P A TP S P PV +PE++E++ E P P V + P+S P
Sbjct: 755 ILEPVHAP-TPNSKPVQSPTPSSEPVSSPEQSEEV-EAPEPTP-VNPSSVPSSSP 806
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 32.7 bits (71), Expect = 0.13
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 74 QMQAPQYQPELQMQQSMAPIPISIPAG--ASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQ 131
Q Q PQY +Q QQ + P+ P +S VS+ ++Q + + +
Sbjct: 35 QSQPPQYSQPIQQQQ-LFPVRPGQPVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPM 93
Query: 132 TG---PGPYVAQTYT--PASYPVAQQVPVAQDSSK 161
TG GP + YT P+SYP Q + Q +S+
Sbjct: 94 TGFATSGPPFSSPYTFVPSSYPQQQPTSLVQPNSQ 128
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 32.3 bits (70), Expect = 0.17
Identities = 33/124 (26%), Positives = 44/124 (35%), Gaps = 9/124 (7%)
Query: 37 PSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPIS 96
P P+ P+ P+ SP P S ++ AP PE+ Q P S
Sbjct: 56 PLSPSSSPEEDSPLPPSSSP--EEDSPLAPSSSPEVDSPLAPSSSPEVDSPQP----PSS 109
Query: 97 IPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTPA--SYPVAQQVP 154
P S P S P P + + E L + P P Q +P+ SYP VP
Sbjct: 110 SPEADSPLPPSSSPEANSP-QSPASSPKPESLADSPSPPPPPPQPESPSSPSYPEPAPVP 168
Query: 155 VAQD 158
D
Sbjct: 169 APSD 172
>At1g50520.1 68414.m05667 cytochrome P450 family protein similar
to CYTOCHROME P450 93A3 GB:O81973 from [Glycine max]
Length = 533
Score = 30.3 bits (65), Expect = 0.69
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 14 MFFLVSVGLVASSEAFFLKWGSEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMY 73
+F L+ + + AFF K +P P Q L P SP P I + + K +
Sbjct: 13 IFILLGIFSLFCLSAFFFK---KPKDPQLQGCGLPP-SPPSLPVIGHLHLLLSVPCHKSF 68
Query: 74 QMQAPQYQPELQMQQSMAPIPI 95
Q + +Y P L ++ PI I
Sbjct: 69 QKLSSKYGPLLHLRAFNIPIVI 90
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 29.9 bits (64), Expect = 0.91
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 76 QAPQYQPELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPG 135
QAP P S A P + S+TP P PV+P L P
Sbjct: 22 QAPGPAPTRSPLPSPAQPPRTAAPTPSITPTPTPTPSATPTAAPVSPPAGSPLPSSASP- 80
Query: 136 PYVAQTYTPASYPVA 150
P + TP PVA
Sbjct: 81 PAPPTSLTPDGAPVA 95
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.5 bits (63), Expect = 1.2
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 51 SPNISPAIRYQYT--YTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPVSL 108
+P+ SPA ++ + P S +P + P +P P S PA + TP +
Sbjct: 236 TPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPATPSPM 295
Query: 109 QHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTPASYPVAQQVPVAQDSS 160
P P + A + T P ++T TP + + P + +S
Sbjct: 296 TPQSPSPVSSPSPDQSAAPSDQSTPLAPSPSET-TPTADNITAPAPSPRTNS 346
Score = 28.7 bits (61), Expect = 2.1
Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Query: 37 PSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPIS 96
PS T SP + + +++P + P + P S A P
Sbjct: 196 PSHATSHSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSH 255
Query: 97 IPAGA-SLTPV-SLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTPASYPVAQQVP 154
PA A S +P S H P P +P + Q P P Q+ +P S P Q
Sbjct: 256 SPAHAPSHSPAHSPSHSPATP-KSP-SP-SSSPAQSPATPSPMTPQSPSPVSSPSPDQSA 312
Query: 155 VAQDSS 160
D S
Sbjct: 313 APSDQS 318
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 29.5 bits (63), Expect = 1.2
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 7/122 (5%)
Query: 39 QPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPE--LQMQQSMAPIPIS 96
+P + + + ++ A+ +Q P + Q Y P Q+Q + AP+P+S
Sbjct: 140 EPKKSENTSDAHNQQLALALPHQIAPQPQVQPQPQPQQHQYYMPPPPTQLQNTPAPVPVS 199
Query: 97 IPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQ----EQTGPGPYVAQTYTPASYPVAQQ 152
P P + Q + P P P A+ +Q P A+ + YP
Sbjct: 200 TPPSQLQAPPA-QSQFMPPPPAPSHPSSAQTQSFPQYQQNWPPQPQARPQSSGGYPTYSP 258
Query: 153 VP 154
P
Sbjct: 259 AP 260
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 29.5 bits (63), Expect = 1.2
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 7/122 (5%)
Query: 39 QPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPE--LQMQQSMAPIPIS 96
+P + + + ++ A+ +Q P + Q Y P Q+Q + AP+P+S
Sbjct: 198 EPKKSENTSDAHNQQLALALPHQIAPQPQVQPQPQPQQHQYYMPPPPTQLQNTPAPVPVS 257
Query: 97 IPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQ----EQTGPGPYVAQTYTPASYPVAQQ 152
P P + Q + P P P A+ +Q P A+ + YP
Sbjct: 258 TPPSQLQAPPA-QSQFMPPPPAPSHPSSAQTQSFPQYQQNWPPQPQARPQSSGGYPTYSP 316
Query: 153 VP 154
P
Sbjct: 317 AP 318
>At4g39680.1 68417.m05614 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 633
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 78 PQYQPELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAE 126
PQ+QP+ Q P + P + P ++ + L P P+APEE E
Sbjct: 547 PQHQPQAQTLSRPPPTALPPPPPLAKPPHVVERLPLPP-PPPIAPEEQE 594
>At2g44690.1 68415.m05562 Rac-like GTP-binding protein (ARAC9)
identical to rac-like protein ARAC9 GI:5381419 from
[Arabidopsis thaliana]
Length = 209
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 69 SRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKL 128
SR ++ A ++ PEL+ PI + + + L ++Q + P C + PE+ ++L
Sbjct: 101 SRPSFENIAKKWVPELRHYAPTVPI-VLVGTKSDLRD-NMQFPKNYPGACTIFPEQGQEL 158
Query: 129 QEQTGPGPYV 138
+++ G Y+
Sbjct: 159 RKEIGALAYI 168
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 70 RKMYQMQAPQYQPELQMQQSMAP--IPISIPAGASLTPVSLQ 109
R+M +M + Q ++Q Q P +P+S PA ++ P+++Q
Sbjct: 216 REMTKMADARKQHQMQQSQQEVPENVPVSAPAKTTVAPLAVQ 257
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 70 RKMYQMQAPQYQPELQMQQSMAP--IPISIPAGASLTPVSLQ 109
R+M +M + Q ++Q Q P +P+S PA ++ P+++Q
Sbjct: 216 REMTKMADARKQHQMQQSQQEVPENVPVSAPAKTTVAPLAVQ 257
>At1g30570.1 68414.m03740 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 849
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 14 MFFLVSVGL-VASSEAFFLKWGSEPSQPTQQKTWLQPMSPNISPAIR 59
+FF +G A S++F + GS + +TW+ +SPN S ++
Sbjct: 17 IFFTYVIGYGEAQSKSFLVDCGSNATTEVDGRTWVGDLSPNKSVTLQ 63
>At1g29240.1 68414.m03576 expressed protein contains Pfam profile:
PF05097 protein of unknown function (DUF688)
Length = 577
Score = 28.3 bits (60), Expect = 2.8
Identities = 22/95 (23%), Positives = 32/95 (33%)
Query: 64 YTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPE 123
+T YDS+ P P + P S+P P L+ P +C + E
Sbjct: 34 FTDYDSKTSECPSVPVLVPYMMGLDDEVTEPASVPFTWEQAPGRLKGNDFKPQVCVLMKE 93
Query: 124 EAEKLQEQTGPGPYVAQTYTPASYPVAQQVPVAQD 158
E + PG V T +QV + D
Sbjct: 94 EEQVFTPCLPPGKAVDANMTRLQSSKGKQVEESDD 128
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 36 EPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQ 81
+P P Q + +P PN P R+ + R + QAP Q
Sbjct: 365 DPQSPNQPPSAPRPQFPNQQPTGRFDPQFPSQPPRPQFPNQAPNQQ 410
>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
similar to GTL1 [Arabidopsis thaliana] GI:2664198
Length = 669
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 78 PQYQPELQMQQSMAPIPISIPAGASLTPV-SLQHVQLVPCMCPVAPEEAEKLQ-EQTGPG 135
P YQP + + +A P+S S P+ ++ Q++P P P + Q +Q P
Sbjct: 359 PPYQPPPAVTKRVAEPPLSTAQSQSQQPIMAIPQQQILPPPPPSHPHAHQPEQKQQQQPQ 418
Query: 136 PYVAQTYTPASYPVAQQVPVAQ 157
+ + +S P + + P A+
Sbjct: 419 QEMVMSSEQSSLPSSSRWPKAE 440
>At1g48450.1 68414.m05416 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 88 QSMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQ 129
+S+AP+ + P G L+ + + H LVP ++ E+LQ
Sbjct: 81 ESIAPLQLKSPVGQFLSQILVSHPHLVPA---AVEQQLEQLQ 119
>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 324
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 32 KWGSEPSQ-PTQQKTWLQPMSPNISPAIRYQYTYTPYDSRK 71
K+ P Q P Q ++ QP+ + P +++ T++ +DS K
Sbjct: 187 KFSFSPKQNPHQYVSYRQPLKRHCRPTKKFENTFSDFDSGK 227
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.1 bits (57), Expect = 6.4
Identities = 30/121 (24%), Positives = 38/121 (31%), Gaps = 2/121 (1%)
Query: 34 GSEPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPI 93
GS PS PT P SP+ISP+ P +P P P
Sbjct: 505 GSPPSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPS-SPTPSSPIPSPPT 563
Query: 94 PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQTGPGPYVAQTYTPASYPVAQQV 153
P + P S S + P P P P P + TP+S P +
Sbjct: 564 PSTPPTPISPGQNSPPIIPSPPFTGPSPPSSPSPPLPPVIPSPPIVGP-TPSSPPPSTPT 622
Query: 154 P 154
P
Sbjct: 623 P 623
>At2g10070.2 68415.m01044 expressed protein very low similarity to
AHM1 [Triticum aestivum] GI:6691467
Length = 208
Score = 27.1 bits (57), Expect = 6.4
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 50 MSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPVSLQ 109
M I+P + QY +TP D+ Q + + + Q +S P P +L S
Sbjct: 1 MGKRINP-LPPQYNFTPADNNPPPQSSQERVRVQPQQARSFTPRVSDYPPPQALFQNSSN 59
Query: 110 HVQLVPCMCPVAPEEAEKLQ-EQTGPGPYVAQTYTPASYPVAQ 151
VP + EA Q P Q + ASYP +Q
Sbjct: 60 REVPVPLLSEEVQNEASNRPIPQQDPSSSPLQN-SHASYPSSQ 101
>At2g10070.1 68415.m01045 expressed protein very low similarity to
AHM1 [Triticum aestivum] GI:6691467
Length = 150
Score = 27.1 bits (57), Expect = 6.4
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 50 MSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQQSMAPIPISIPAGASLTPVSLQ 109
M I+P + QY +TP D+ Q + + + Q +S P P +L S
Sbjct: 1 MGKRINP-LPPQYNFTPADNNPPPQSSQERVRVQPQQARSFTPRVSDYPPPQALFQNSSN 59
Query: 110 HVQLVPCMCPVAPEEAEKLQ-EQTGPGPYVAQTYTPASYPVAQ 151
VP + EA Q P Q + ASYP +Q
Sbjct: 60 REVPVPLLSEEVQNEASNRPIPQQDPSSSPLQN-SHASYPSSQ 101
>At1g23000.1 68414.m02874 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains PF00403 Heavy-metal-associated
domain
Length = 358
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 36 EPSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPE 83
+P Q Q++ P S N Y YT +PY Y + QYQ +
Sbjct: 290 QPQQMMYQRSSFVPASSN---GYYYNYTPSPYSYYPYYPYASDQYQQQ 334
>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
protein Contains similarity to pre-mRNA processing
protein PRP39 gb L29224 from S. cerevisiae. ESTs
gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
from this gene
Length = 768
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 121 APEEAEKLQEQTGPGPYVAQTYTPASY--PVAQQVPVA 156
AP+ + + G Y AQTY SY PVA P A
Sbjct: 711 APQAPTPVPQAAAYGAYPAQTYPTQSYAPPVAAAAPAA 748
>At4g31610.1 68417.m04490 transcriptional factor B3 family protein /
reproductive meristem protein 1 (REM1) similar to
reproductive meristem gene 1 from [Brassica oleracea
var. botrytis] GI:3170424; contains Pfam profile
PF02362: B3 DNA binding domain; identical to cDNA
reproductive meristem protein 1 (REM1) GI:13604226
Length = 517
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 123 EEAEKLQEQTGPGPYVAQTYTPASYPVAQ-QVPVAQDSSKTTNK 165
+E K +E+ P P++ YTP+ Q +PV+ + + NK
Sbjct: 271 DEVSKGKEKKTPSPFLIVKYTPSRETTGQLSLPVSFTRNNSINK 314
>At3g17800.1 68416.m02270 expressed protein
Length = 421
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 90 MAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQ 129
+AP+ + PAG L+ + + H LVP ++ E+LQ
Sbjct: 92 IAPLQLQSPAGQFLSQILVSHPHLVPA---AVEQQLEQLQ 128
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187; contains
Pfam profile PF02845: CUE domain
Length = 1973
Score = 26.6 bits (56), Expect = 8.4
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 37 PSQPTQQKTWLQPMSPNISPAIRYQYTYTPYDSRKMY-QMQAPQYQPELQMQQSMAPIPI 95
PS+P + P S ++ +I T T +R+ Q + +Y P+ QQ P P+
Sbjct: 1071 PSRPLRLNYRFPPASHHLFSSIADLLTETTMSNRRSNRQDENTRYVPKGHQQQKFVPKPM 1130
Query: 96 SIPAGASLTP 105
+ ++ TP
Sbjct: 1131 NPTPTSNSTP 1140
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 48 QPMSPNISPAIRYQYTYTPYDSRKMYQMQAPQYQPELQMQ 87
QP + N + Y Y TPY MY Y P + Q
Sbjct: 145 QPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQ 184
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.127 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,951,904
Number of Sequences: 28952
Number of extensions: 163982
Number of successful extensions: 500
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 29
length of query: 166
length of database: 12,070,560
effective HSP length: 76
effective length of query: 90
effective length of database: 9,870,208
effective search space: 888318720
effective search space used: 888318720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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