Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000555-TA|BGIBMGA000555-PA|IPR001594|Zinc finger,
DHHC-type
         (295 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    25   0.67 
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    25   0.67 
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    25   0.67 
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    25   0.67 
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    25   0.67 
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    25   0.67 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.6  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 83  ERAHHCSVCQRCIRKMDH 100
           ER + C +C +  R+ DH
Sbjct: 105 ERPYSCDICGKAFRRQDH 122


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 93  RCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAA 126
           +C++ + H  P  +  +G+ N  Y  ++T ++ A
Sbjct: 77  KCMQYIQHPLPGQDYVIGQENCLYLTIYTTHVNA 110


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 93  RCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAA 126
           +C++ + H  P  +  +G+ N  Y  ++T ++ A
Sbjct: 77  KCMQYIQHPLPGQDYVIGQENCLYLTIYTTHVNA 110


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 93  RCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAA 126
           +C++ + H  P  +  +G+ N  Y  ++T ++ A
Sbjct: 77  KCMQYIQHPLPGQDYVIGQENCLYLTIYTTHVNA 110


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 93  RCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAA 126
           +C++ + H  P  +  +G+ N  Y  ++T ++ A
Sbjct: 77  KCMQYIQHPLPGQDYVIGQENCLYLTIYTTHVNA 110


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 93  RCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAA 126
           +C++ + H  P  +  +G+ N  Y  ++T ++ A
Sbjct: 77  KCMQYIQHPLPGQDYVIGQENCLYLTIYTTHVNA 110


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 33  DMHNRCCGG 41
           D  NRCCGG
Sbjct: 971 DFSNRCCGG 979


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.138    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,818
Number of Sequences: 317
Number of extensions: 3297
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 295
length of database: 114,650
effective HSP length: 56
effective length of query: 239
effective length of database: 96,898
effective search space: 23158622
effective search space used: 23158622
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)