Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000555-TA|BGIBMGA000555-PA|IPR001594|Zinc finger,
DHHC-type
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 82 1e-16
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 81 2e-16
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 79 6e-16
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 69 1e-12
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 57 3e-09
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 29 1.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 4.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.8
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 9.8
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 81.8 bits (193), Expect = 1e-16
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAI 127
C KC +KP R++HC C+RCI + DHHCPW NCVG N + F+LF F ++ +
Sbjct: 402 CLKCFQVKPPRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTL 455
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 80.6 bits (190), Expect = 2e-16
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 63 MSFREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTF 122
M+ + G+ F C KC K +R+HHCS C +CI +MDHHC W NCVG N K+F L F
Sbjct: 89 MTLQNGKSRF-CEKCQEYKCDRSHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECF 147
Query: 123 YIAAISIHAVCLSVYQFI 140
Y ++++++C+ F+
Sbjct: 148 Y---LNLYSICVLYSTFV 162
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 79.4 bits (187), Expect = 6e-16
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 73 KCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAV 132
KC+ C KP R+ HC +C C+ K DHHC W+NNCVG NN +YF LF + H++
Sbjct: 159 KCSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLNNARYFFLFLLCTIQLLFHSI 218
Query: 133 CLSVYQF 139
Y F
Sbjct: 219 LRLGYHF 225
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 68.5 bits (160), Expect = 1e-12
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C +P RA HC +C C+ +DHHC W+N C+G N +Y+ +F + +++
Sbjct: 184 CHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVLSALYLTG 243
Query: 134 LSVYQFI 140
L Y I
Sbjct: 244 LGFYTSI 250
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFY 123
C C P+R+HH V RCIRK DH+C +V V +NQK+F F FY
Sbjct: 115 CGTCKCWLPDRSHHSRVSMRCIRKFDHYCSFVGKDVCFSNQKFFYQFLFY 164
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 65 FREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDH 100
FR+G+V ++C K CS+ A +C +C R H
Sbjct: 100 FRKGEVFYRC-KTCSVDSNSA----LCVKCFRATSH 130
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 47 KGAVPKGNATKEMIKQMSFREGQVIFKCTKCCSIKPERAHH 87
+ V KG A + + Q FR G+VI + C E+ ++
Sbjct: 225 QAGVVKGTAVSQFLDQRGFRYGEVIMDSVESCQNAIEKLNN 265
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 3 REFYDSSEDDEMESKYQIDSE 23
+EFYD ED+E E + Q++ E
Sbjct: 184 QEFYDDFEDEEEEVEEQVEEE 204
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 65 FREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDH 100
FR G+VI++C K C + + C +C C +H
Sbjct: 102 FRAGEVIYRC-KNCGLD----NTCVLCAPCFHATNH 132
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 247 SSRPAHGHGSFYNYRNPALVDVKNAPA 273
S R H HG++ Y N A++ + P+
Sbjct: 556 SGRELHSHGTYLVYLNGAILGISRYPS 582
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.138 0.458
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,362,670
Number of Sequences: 5004
Number of extensions: 55574
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 11
length of query: 295
length of database: 2,362,478
effective HSP length: 72
effective length of query: 223
effective length of database: 2,002,190
effective search space: 446488370
effective search space used: 446488370
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)
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