Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000555-TA|BGIBMGA000555-PA|IPR001594|Zinc finger,
DHHC-type
         (295 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)               81   1e-15
SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)               71   1e-12
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   4e-10
SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)               54   2e-07
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   50   3e-06
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               32   0.64 
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       31   1.1  
SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   4.5  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                29   4.5  
SB_31230| Best HMM Match : C1_1 (HMM E-Value=0.92)                     29   6.0  
SB_700| Best HMM Match : Fer4 (HMM E-Value=0.04)                       29   6.0  

>SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)
          Length = 559

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 31/68 (45%), Positives = 43/68 (63%)

Query: 73  KCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAV 132
           +C  C   KP R+ HCS+C+ CI + DHHC WVNNC+G NN  +F+ F F  AA+ I+  
Sbjct: 53  ECPTCELDKPARSKHCSLCKACINRFDHHCSWVNNCIGANNYGFFIGFIFTAAALCIYVT 112

Query: 133 CLSVYQFI 140
            L +  F+
Sbjct: 113 FLVMIVFV 120


>SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)
          Length = 341

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 27/72 (37%), Positives = 38/72 (52%)

Query: 74  CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
           C+KC  I+    HHCS C  C+  M HHCP+ NNC+G  N  Y+  F         +A  
Sbjct: 128 CSKCSRIRSSGTHHCSWCHTCVEMMCHHCPFTNNCIGLRNYIYYYSFLLQAVVGLGYACY 187

Query: 134 LSVYQFITCIRH 145
           L+++ F  C+ H
Sbjct: 188 LAIFPFQKCMYH 199


>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 74  CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
           C  C    P RA+HC VC  C+ + DHHC +   CVG +N +Y++   FY+   +++A  
Sbjct: 108 CPFCQLNSPPRAYHCHVCDICVLRRDHHCIFAGKCVGHSNYRYYLFLAFYLWLGALYA-N 166

Query: 134 LSVYQFITCI 143
           L  ++++T +
Sbjct: 167 LFHWEYVTSV 176


>SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)
          Length = 288

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 74  CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWV 105
           C  C   +P RA HCS+C  C+ + DHHCPW+
Sbjct: 147 CFTCKIFRPPRASHCSMCDNCVERFDHHCPWI 178


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 74  CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLF 120
           C  C  + P  + HC +C  C+  +DHHC ++  CVG  N + FV+F
Sbjct: 227 CYHCELVAPIFSKHCRLCNHCVLAIDHHCLFLMCCVGYKNHRAFVVF 273


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 73  KCTKC----CSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFY 123
           KC+KC    C        H   C RC   M   CP  N  V  N + YF + T Y
Sbjct: 348 KCSKCNVNDCDTLFCPCGHLMFCSRCADNMKF-CPLCNESVNGNQKIYFAMDTSY 401


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 207  VVPSMCRPYDPEDKSLKDVLPSSGQFEAFYPRETHG-IPNGSSRP 250
            V+P    P  P+D  L+D +PS G  +   P  T+G I + S+ P
Sbjct: 1534 VIPEDTLPLHPDDLPLEDEIPSEGSADEADPNPTNGPIASPSNTP 1578


>SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 51  PKGNATKEMIKQMSFREGQVIFKCTKCCSIKPERAHHCSVC 91
           P G+    ++ Q+    G V+F C  C SI  +R+  CSVC
Sbjct: 132 PSGSTATNLLAQLDI--GSVLF-CDNCSSIIDKRSKVCSVC 169


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 22   SECQVLTRPDKDMHNRCCGGKAWCIKGAVPKGNATKEMIKQ 62
            +ECQ+ T   +   ++CC    W  KG V   N   E + +
Sbjct: 1093 NECQIKTESGEKCESKCCAEDTW--KGGVKLENCVSESLSK 1131


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 72   FKCTKC--CSIKPERAHHCSVCQRCI 95
            + C KC  C I  +++ HC VC  C+
Sbjct: 1941 YHCDKCGICRIHKDQSFHCEVCNVCL 1966


>SB_31230| Best HMM Match : C1_1 (HMM E-Value=0.92)
          Length = 174

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 72  FKCTKCCSIKPERAHHCSVC 91
           F C  C    P RAHHC++C
Sbjct: 94  FFCHDCQMNSPGRAHHCNLC 113


>SB_700| Best HMM Match : Fer4 (HMM E-Value=0.04)
          Length = 202

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 68  GQVIFKCTKCCSIKPERAHHCSVCQRC 94
           G  + +C  C  ++P R  HC  C RC
Sbjct: 114 GSRLRRCGYCAIMQPLRTKHCEDCGRC 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.138    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,616,501
Number of Sequences: 59808
Number of extensions: 445701
Number of successful extensions: 1212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1200
Number of HSP's gapped (non-prelim): 15
length of query: 295
length of database: 16,821,457
effective HSP length: 82
effective length of query: 213
effective length of database: 11,917,201
effective search space: 2538363813
effective search space used: 2538363813
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)