Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000555-TA|BGIBMGA000555-PA|IPR001594|Zinc finger,
DHHC-type
(295 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0043 + 14016958-14017106,14017198-14017291,14018488-140185... 77 2e-14
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 77 2e-14
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 75 9e-14
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391... 74 2e-13
01_07_0024 - 40559423-40559863,40559959-40560192,40560546-405608... 73 2e-13
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 73 3e-13
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 73 4e-13
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 71 1e-12
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 71 1e-12
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 67 1e-11
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927... 67 2e-11
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 63 2e-10
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 62 5e-10
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453... 62 5e-10
10_05_0114 + 9294747-9294788,9294883-9294996,9295066-9295173,929... 60 2e-09
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 56 3e-08
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 56 3e-08
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529... 53 2e-07
02_05_1239 + 35174901-35174903,35175001-35175102,35175180-351752... 43 3e-04
03_02_0110 - 5678057-5678794,5679279-5679470,5679971-5680087,568... 42 4e-04
03_02_0535 + 9277995-9278049,9278140-9278274,9278722-9278788,927... 38 0.007
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 35 0.089
07_03_0311 + 16597023-16597220,16598100-16598222,16598410-165984... 31 0.83
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423... 31 1.1
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 29 3.4
03_03_0087 - 14347634-14347750,14348127-14348201,14348285-143483... 29 5.9
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 28 7.8
>03_03_0043 +
14016958-14017106,14017198-14017291,14018488-14018582,
14018658-14018825,14019091-14019163,14019236-14019288,
14019720-14019811,14020141-14020193,14020272-14020397,
14020710-14020955
Length = 382
Score = 77.0 bits (181), Expect = 2e-14
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 53 GNATKEMIKQM--SFREGQVIFK---CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNN 107
G T E + Q ++ +IF+ C+ C +P RA HC +C +C+ + DHHC W+NN
Sbjct: 136 GTVTAENVSQYLSAYPYDGIIFEEKECSTCKIARPARAKHCRICDKCVARFDHHCGWMNN 195
Query: 108 CVGENNQKYFVLFTFYIAAISIHAVCL 134
C+GE N +YFV F + I ++ +
Sbjct: 196 CIGEKNTRYFVAFLVWHFLICLYGAVI 222
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 77.0 bits (181), Expect = 2e-14
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C +P RA HCS+C C+RK DHHCPWV C+G N ++F LF I+ ++ V
Sbjct: 910 CDTCLLYRPPRASHCSICNNCVRKFDHHCPWVGQCIGLRNYRFFFLF---ISTSTLLCVY 966
Query: 134 LSVYQFITCIRHE 146
+ V ++ + H+
Sbjct: 967 VFVVSWLNIVAHK 979
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 74.5 bits (175), Expect = 9e-14
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C +P R HCS+C C+ + DHHCPWV C+G N ++F +F F S +C
Sbjct: 125 CDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGRRNYRFFYMFVF-----STTLLC 179
Query: 134 LSVYQF 139
L V+ F
Sbjct: 180 LYVFGF 185
>08_02_1395 -
26737972-26738418,26738505-26738738,26738887-26739183,
26739399-26739581,26739778-26739834,26739960-26740016,
26740228-26740322,26740714-26740765,26740821-26740910
Length = 503
Score = 73.7 bits (173), Expect = 2e-13
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C +P R HCS+C C+ + DHHCPWV C+G N ++F +F F S +C
Sbjct: 240 CDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFYMFVF-----STTLLC 294
Query: 134 LSVYQF 139
L V+ F
Sbjct: 295 LYVFAF 300
>01_07_0024 -
40559423-40559863,40559959-40560192,40560546-40560842,
40561048-40561230,40561534-40561590,40561851-40561937
Length = 432
Score = 73.3 bits (172), Expect = 2e-13
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C +P R HCS+C C+ + DHHCPWV C+G N ++F +F F S +C
Sbjct: 171 CDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFYMFVF-----STTLLC 225
Query: 134 LSVYQF 139
L V+ F
Sbjct: 226 LYVFGF 231
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 72.9 bits (171), Expect = 3e-13
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQ-KYFVLFTFYIAAISI 129
C C ++P R+ HCS C RC+ + DHHCPWV+NC+G+ N+ ++F+ T + A+ I
Sbjct: 401 CITCKIVRPVRSKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWEFFMFITLEVFAMII 457
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 72.5 bits (170), Expect = 4e-13
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQ-KYFVLFTFYIAAISIHAV 132
C C ++P R+ HCS C RC+ + DHHCPWV+NC+G+ N+ ++F+ ++A+ I V
Sbjct: 366 CITCKIVRPVRSKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWEFFMFLILEVSAMIITGV 425
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 70.5 bits (165), Expect = 1e-12
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C +P R HCSVC C+ + DHHCPWV C+G+ N ++F +F I++ + +C
Sbjct: 200 CHTCLLYRPPRCSHCSVCNNCVDRFDHHCPWVGQCIGKRNYRFFFMF---ISSTTF--LC 254
Query: 134 LSVYQF 139
L V+ F
Sbjct: 255 LYVFVF 260
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 70.5 bits (165), Expect = 1e-12
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLF 120
C C +P R HCS+C C+ + DHHCPWV C+G+ N ++F +F
Sbjct: 162 CHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMF 208
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 67.3 bits (157), Expect = 1e-11
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLF 120
C C I+P R+ HC C+ C+ + DHHCPW++NCVG N+ F +F
Sbjct: 374 CPTCKIIRPMRSKHCPTCKHCVEQFDHHCPWISNCVGRRNKWDFFVF 420
>12_01_0934 -
9273325-9273807,9273898-9274062,9274155-9274235,
9274347-9274475,9274590-9274661,9274758-9274826,
9275143-9275514,9275590-9275703,9275729-9275848
Length = 534
Score = 66.9 bits (156), Expect = 2e-11
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 68 GQVIFKCTKC-CSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAA 126
G I C C C +K R+ HC C RC+ DHHC W+NNC+G N F+L F++
Sbjct: 190 GHDISYCPVCDCEVKL-RSKHCKTCDRCVDGFDHHCRWLNNCIGRRNYASFILLMFFVLL 248
Query: 127 ISIHAVCLSVYQFITC 142
+ + ++ F+ C
Sbjct: 249 MLVIEGGTAIAIFVRC 264
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 63.3 bits (147), Expect = 2e-10
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVG 110
C C +P R+ HCS+C C+ K DHHCPWV C+G
Sbjct: 157 CETCLRYRPPRSSHCSICNNCVEKFDHHCPWVGQCIG 193
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 57 KEMIKQMSFREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENN-QK 115
+E +Q + EG +F C+ C + + HC VC +C+ DHHC W+NNC+G+ N +
Sbjct: 159 REWSEQQASEEG--MFFCSLCEVEVLKYSKHCRVCDKCVDGFDHHCRWLNNCIGKRNYMR 216
Query: 116 YFVLFT---FYIAAISIHAVCLSVYQFI 140
+F+L T F + S V + V+ F+
Sbjct: 217 FFILMTSSLFLLILQSAVGVLVLVFCFV 244
>05_04_0438 +
21244735-21244782,21245089-21245274,21245307-21245384,
21245385-21245678,21246137-21246262,21246935-21247168,
21247534-21248061
Length = 497
Score = 62.1 bits (144), Expect = 5e-10
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGE 111
C C +P R HCS+C C+ + DHHCPWV C+G+
Sbjct: 165 CDTCMIYRPPRCSHCSICNNCVERFDHHCPWVGQCIGQ 202
>10_05_0114 +
9294747-9294788,9294883-9294996,9295066-9295173,
9295774-9296145,9296584-9296652,9296754-9296825,
9297070-9297198,9297690-9297770,9298622-9298807,
9299135-9299860
Length = 632
Score = 60.5 bits (140), Expect = 2e-09
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 71 IFKCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIH 130
+F C+ C + + HC VC +C+ DHHC W+NNC+G+ N K F + + I
Sbjct: 203 MFFCSLCEVEVLQHSKHCRVCDKCVDGFDHHCRWLNNCIGKRNYKRFFILMASAVLLLIM 262
Query: 131 AVCLSVYQFITCI 143
+ + I C+
Sbjct: 263 QWLVGILVLILCL 275
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 56.4 bits (130), Expect = 3e-08
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 58 EMIKQMSFREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYF 117
E +Q + E + +F CT C + + + HC C +C+ DHHC W+NNCVG N F
Sbjct: 95 EAYQQEDYDE-EALF-CTLCNAEVRKNSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYVTF 152
Query: 118 V-LFTFYIAAISIHAVCLSVYQFITC 142
+ L +A +++ + + + F+ C
Sbjct: 153 LCLMAVSLAWLAVES-GVGIAVFVRC 177
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 72 FKCTKCCSIK-PERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIH 130
F C+ C I+ P R HC C +C+ + DHHC W+ C+ + N F + F +++
Sbjct: 131 FTCSYCRLIQEPPRTKHCHDCDKCVLQFDHHCVWLGTCIAKRNYCRFWWYIFEQTVLTVW 190
Query: 131 AVCLSVYQFITCIRHEW 147
V + F I W
Sbjct: 191 TVAFYIQFFYLGIVVSW 207
>01_06_1317 -
36251231-36251341,36252514-36252609,36252879-36252956,
36253037-36253138,36254509-36254784
Length = 220
Score = 53.2 bits (122), Expect = 2e-07
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 95 IRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVCLSV 136
I++ DHHC W+NNCVG N K F++F Y S++++ L +
Sbjct: 89 IKRKDHHCIWINNCVGHENYKIFLVFVLYAVVASLYSLVLVI 130
>02_05_1239 +
35174901-35174903,35175001-35175102,35175180-35175248,
35176466-35176561,35176724-35176813
Length = 119
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 98 MDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVCLSVYQFITCIRHEW 147
MDHHC W+NNCVG N K F++ S+++ + ++ HE+
Sbjct: 1 MDHHCVWINNCVGYANYKSFIICVLNATIGSLYSFVVFLFDLFQ-TEHEY 49
>03_02_0110 -
5678057-5678794,5679279-5679470,5679971-5680087,
5680331-5680402,5680444-5680569,5681086-5681445,
5681944-5682057,5682158-5682199
Length = 586
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 22/88 (25%)
Query: 54 NATKEMIKQMSFREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHC----------- 102
+A + +Q EG +F C+ C + + + HC VC +C+ DHHC
Sbjct: 148 HADNQSSEQHMSEEG--MFFCSLCEAEVLKNSKHCRVCDKCVDGFDHHCRVRYTSFVFPN 205
Query: 103 --------PWVNNCVGENNQK-YFVLFT 121
W+NNC+G+ N K +F+L T
Sbjct: 206 GYTLSPLNNWLNNCIGKRNYKGFFLLMT 233
>03_02_0535 +
9277995-9278049,9278140-9278274,9278722-9278788,
9278948-9279044,9279156-9279252,9279640-9279680,
9280314-9280379,9281776-9281848,9282390-9282502,
9282916-9283089
Length = 305
Score = 38.3 bits (85), Expect = 0.007
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 84 RAHHCSVCQRCIRKMDHHCPWVNNCV 109
R HC+ C+ +R DHHCP NC+
Sbjct: 125 RVRHCNCCKANVRGYDHHCPAFGNCI 150
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 34.7 bits (76), Expect = 0.089
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 68 GQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHC 102
G+ CT C + + + HC C +C+ DHHC
Sbjct: 147 GEEALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHC 181
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 83 ERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVCLSVYQFITC 142
E A C++C +RK HC + CV + + F + I++ +C ++
Sbjct: 148 EEALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRLAIEFGV-GIAVIVLCFVDKNALSN 206
Query: 143 IRHEWRECSTYSPPATVV 160
I+ + T +P A +V
Sbjct: 207 IQDKLGNGMTRAPFAVIV 224
>07_03_0311 +
16597023-16597220,16598100-16598222,16598410-16598448,
16599063-16599288,16599456-16599466
Length = 198
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 67 EGQVIFK-CTKCCSIKPERAHHCSV 90
EGQ K C++C + KP R HHCSV
Sbjct: 171 EGQSAQKYCSRCQNGKPPRCHHCSV 195
>08_02_1429 +
27040293-27040523,27041618-27041739,27042290-27042392,
27042530-27042620,27042851-27043023,27043379-27043467,
27044212-27044319,27044408-27044498,27044708-27044797,
27045587-27045658,27045756-27045849,27045940-27046087,
27046961-27047222
Length = 557
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 47 KGAVPKGNATKEMIKQMSFREGQVIFKCTKCCSIKPERAHHCSVCQR 93
K AV KG TK+ + + S + C +C I P CSVC +
Sbjct: 509 KKAVTKGK-TKKQLPRTSSDNSDEGWPCERCTFINPSSVDACSVCDK 554
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 188 WNDETMRIMLLIFCGAL---LIVVPSMCRPYDPEDKSLKDVLPSSGQFEAFYPRETHGIP 244
W+ + ++ G L ++V PS R YD D+ +LP G + F I
Sbjct: 281 WSSKDFNFSYSVYSGDLSGGVLVQPSTLRDYDDRDRFCIFLLPGGGNRKVFRKAVVFVID 340
Query: 245 NGSSRPAHGHGSFYNYRNPALVDV 268
S H + N + AL ++
Sbjct: 341 TSGSMQGHPLENVKNAMSTALSEL 364
>03_03_0087 -
14347634-14347750,14348127-14348201,14348285-14348377,
14348498-14348554,14348627-14348706,14349280-14349383,
14349599-14349636,14349717-14349810,14350116-14350208,
14351265-14351341
Length = 275
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 193 MRIMLLIFCGALLIVVPSMCRPYDPEDKSLKDVLPSSGQFE 233
M ++ LI CG + I+V + P++ + + + P + F+
Sbjct: 220 MALLFLIVCGVIAIIVVKIVNPHNKNIRDIPGLAPPAQNFQ 260
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 52 KGNATKEMIKQMSFREGQVIF--KCTKCCSIKPERAHHCSVCQ 92
K + + E + M F E ++IF K CC ++P HC C+
Sbjct: 321 KKHDSDEWSESMYFAEVKMIFRRKYYFCCPLEPRENGHCYACR 363
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.138 0.458
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,073,039
Number of Sequences: 37544
Number of extensions: 376466
Number of successful extensions: 919
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 34
length of query: 295
length of database: 14,793,348
effective HSP length: 82
effective length of query: 213
effective length of database: 11,714,740
effective search space: 2495239620
effective search space used: 2495239620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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