Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000555-TA|BGIBMGA000555-PA|IPR001594|Zinc finger,
DHHC-type
(295 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039720-11|AAK68359.1| 260|Caenorhabditis elegans Hypothetical... 193 1e-49
Z81473-2|CAB03898.1| 240|Caenorhabditis elegans Hypothetical pr... 106 2e-23
Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical pr... 106 2e-23
Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical pr... 101 8e-22
Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical pr... 101 8e-22
Z22180-10|CAH19086.1| 405|Caenorhabditis elegans Hypothetical p... 101 8e-22
Z22180-9|CAD54147.2| 403|Caenorhabditis elegans Hypothetical pr... 101 8e-22
Z69634-9|CAA93457.2| 431|Caenorhabditis elegans Hypothetical pr... 86 3e-17
Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical pr... 86 3e-17
AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical ... 85 4e-17
U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical pr... 76 3e-14
Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical pr... 76 3e-14
AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical ... 74 1e-13
Z79600-1|CAB01873.1| 239|Caenorhabditis elegans Hypothetical pr... 70 2e-12
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 70 2e-12
U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical pr... 69 5e-12
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 65 6e-11
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 65 6e-11
U40415-9|AAK39249.3| 281|Caenorhabditis elegans Hypothetical pr... 64 9e-11
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical ... 58 7e-09
Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical pr... 34 0.14
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 31 1.3
Z54282-1|CAA91056.1| 1203|Caenorhabditis elegans Hypothetical pr... 30 2.3
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro... 30 2.3
U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein. 30 2.3
AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical ... 30 2.3
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 5.2
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 5.2
Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical pr... 28 9.1
DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin p... 28 9.1
>AF039720-11|AAK68359.1| 260|Caenorhabditis elegans Hypothetical
protein F33D11.12 protein.
Length = 260
Score = 193 bits (471), Expect = 1e-49
Identities = 83/146 (56%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 48 GAVPKGNATKEMIKQMSFREGQ-VIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVN 106
GAV KG+ T E I++M GQ I+KC KC SIKP+RAHHCSVC+RCIR+MDHHCPWVN
Sbjct: 59 GAVAKGDCTDETIERMQLINGQQTIYKCQKCASIKPDRAHHCSVCERCIRRMDHHCPWVN 118
Query: 107 NCVGENNQKYFVLFTFYIAAISIHAVCLSVYQFITCIRHEWRECSTYSPPATVVXXXXXX 166
NCVGE NQK+FVLFT YIA +S+HA+ V+QF+ C+ EW++CS+ +PPAT +
Sbjct: 119 NCVGEGNQKFFVLFTMYIALLSMHALYWGVWQFVLCVGAEWQQCSSLTPPATTLLLIFLL 178
Query: 167 XXXXXXXXXTAVMLGTQLHAIWNDET 192
T+VM GTQ+ +I NDET
Sbjct: 179 FESILFAIFTSVMFGTQISSICNDET 204
>Z81473-2|CAB03898.1| 240|Caenorhabditis elegans Hypothetical
protein C17D12.1b protein.
Length = 240
Score = 106 bits (255), Expect = 2e-23
Identities = 39/59 (66%), Positives = 50/59 (84%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAV 132
CT+C S++P RAHHC VC+RC+RKMDHHCPWVNNCVGE NQK+F+ F FY+ A S +++
Sbjct: 53 CTRCDSLRPPRAHHCRVCKRCVRKMDHHCPWVNNCVGEYNQKWFLQFIFYVGASSAYSL 111
>Z81473-1|CAB03897.1| 302|Caenorhabditis elegans Hypothetical
protein C17D12.1a protein.
Length = 302
Score = 106 bits (255), Expect = 2e-23
Identities = 39/59 (66%), Positives = 50/59 (84%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAV 132
CT+C S++P RAHHC VC+RC+RKMDHHCPWVNNCVGE NQK+F+ F FY+ A S +++
Sbjct: 115 CTRCDSLRPPRAHHCRVCKRCVRKMDHHCPWVNNCVGEYNQKWFLQFIFYVGASSAYSL 173
>Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 101 bits (241), Expect = 8e-22
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C KCC IKP+R+HHCS+C++C+ K DHHCPWVNNCV N KYF+LF Y I
Sbjct: 136 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFCIWIAA 195
Query: 134 LSVYQFITCIRHEW 147
++ FI RHE+
Sbjct: 196 TTLPSFIDFWRHEY 209
>Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 101 bits (241), Expect = 8e-22
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C KCC IKP+R+HHCS+C++C+ K DHHCPWVNNCV N KYF+LF Y I
Sbjct: 134 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFCIWIAA 193
Query: 134 LSVYQFITCIRHEW 147
++ FI RHE+
Sbjct: 194 TTLPSFIDFWRHEY 207
>Z22180-10|CAH19086.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 101 bits (241), Expect = 8e-22
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C KCC IKP+R+HHCS+C++C+ K DHHCPWVNNCV N KYF+LF Y I
Sbjct: 136 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFCIWIAA 195
Query: 134 LSVYQFITCIRHEW 147
++ FI RHE+
Sbjct: 196 TTLPSFIDFWRHEY 209
>Z22180-9|CAD54147.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 101 bits (241), Expect = 8e-22
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C KCC IKP+R+HHCS+C++C+ K DHHCPWVNNCV N KYF+LF Y I
Sbjct: 134 CDKCCCIKPDRSHHCSMCEQCVLKFDHHCPWVNNCVNFGNYKYFILFLAYGFIFCIWIAA 193
Query: 134 LSVYQFITCIRHEW 147
++ FI RHE+
Sbjct: 194 TTLPSFIDFWRHEY 207
>Z69634-9|CAA93457.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 85.8 bits (203), Expect = 3e-17
Identities = 31/61 (50%), Positives = 38/61 (62%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C K R+HHCS C RC KMDHHCPW+NNCVG N +YF+ F F+ IH+
Sbjct: 108 CVPCNGFKVPRSHHCSKCDRCCMKMDHHCPWINNCVGHRNHQYFLRFLFFSVVGCIHSTI 167
Query: 134 L 134
+
Sbjct: 168 I 168
>Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 85.8 bits (203), Expect = 3e-17
Identities = 31/61 (50%), Positives = 38/61 (62%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C K R+HHCS C RC KMDHHCPW+NNCVG N +YF+ F F+ IH+
Sbjct: 108 CVPCNGFKVPRSHHCSKCDRCCMKMDHHCPWINNCVGHRNHQYFLRFLFFSVVGCIHSTI 167
Query: 134 L 134
+
Sbjct: 168 I 168
>AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical
protein Y39E4B.7 protein.
Length = 472
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C +P R+ HCSVC RCI DHHCPWV+NCVG+ N +YF F++ ++SIH
Sbjct: 105 CVTCKFYRPPRSSHCSVCNRCIETFDHHCPWVHNCVGKRNYRYFF---FFLCSLSIH--- 158
Query: 134 LSVYQFITCIRHEWRECST 152
+Y F C + W T
Sbjct: 159 -MMYVFFLCFAYVWSGSDT 176
>U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical
protein C43H6.7 protein.
Length = 306
Score = 76.2 bits (179), Expect = 3e-14
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C+KC K + AHHCSVC++C+ MDHHC W+N CVG +N ++F LF IA +++ A
Sbjct: 105 CSKCNYWKSDNAHHCSVCEKCVLGMDHHCIWINQCVGLHNHRHFFLF---IANLTLAAAT 161
Query: 134 LSVYQFITCIRHEWRECSTYSPPATVV 160
+ + + + H + E S + T++
Sbjct: 162 IIIAGYQSFSDHLFLESSQTTYCTTIL 188
>Z71177-7|CAI46554.1| 351|Caenorhabditis elegans Hypothetical
protein AC3.10 protein.
Length = 351
Score = 75.8 bits (178), Expect = 3e-14
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFY 123
C +C IKP+RA HCS C +C K DHHCPW+N CV N KYF+L+ Y
Sbjct: 156 CYECGHIKPDRARHCSSCGKCCIKYDHHCPWINMCVTHVNYKYFLLYIIY 205
>AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical
protein Y47H9C.2 protein.
Length = 368
Score = 74.1 bits (174), Expect = 1e-13
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
CT C +P R HC++C C+ DHHCPWV NC+G N YF F F ++ + I+
Sbjct: 166 CTTCRLYRPPRCSHCAICDNCVLMFDHHCPWVGNCIGLRNYTYFYRFVFCLSILVIYLFA 225
Query: 134 LSV 136
+V
Sbjct: 226 SAV 228
>Z79600-1|CAB01873.1| 239|Caenorhabditis elegans Hypothetical
protein F59C6.2 protein.
Length = 239
Score = 69.7 bits (163), Expect = 2e-12
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYI 124
C KC + K HC C +CI +MDHHCP + CVG +NQ +F LF FY+
Sbjct: 42 CIKCNNWKGPSTSHCKACDKCIYRMDHHCPHIGQCVGAHNQSHFFLFLFYL 92
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 48 GAVPKGNAT-KEMIKQMSFREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVN 106
G +P+ K+ IK + E Q+ C C K +HHCS C +C+ DHHCPW++
Sbjct: 518 GVLPRSTTPFKDFIKDLE--EKQIDRYCFTCWIPKTSSSHHCSQCDKCVDGFDHHCPWIH 575
Query: 107 NCVGENNQKYFVLFTFYIAAISIHAVCLSVY 137
CV N + FV F I + V L +Y
Sbjct: 576 KCVYRKNLRAFVFFCLTIFMFHVFYVLLLLY 606
>U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical
protein R13F6.5 protein.
Length = 244
Score = 68.5 bits (160), Expect = 5e-12
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C KP R HHC C C+ +MDHHCP + C+ N KYF+LF + ++I +
Sbjct: 84 CQLCNYRKPPRWHHCRRCNLCVHRMDHHCPILQLCIHSGNHKYFLLFLVWPLQLAIFTIW 143
Query: 134 LSVYQFITCIR 144
Y F IR
Sbjct: 144 HGYYDFWKTIR 154
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 64.9 bits (151), Expect = 6e-11
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAIS-IHAV 132
C C K + HC+VC C+ DHHCPW+N+CV N + F++F ++ S I+ +
Sbjct: 50 CFTCFIRKMDHTKHCAVCGFCVNNFDHHCPWLNSCVTRRNMREFIMFVISVSVSSAIYCM 109
Query: 133 CLSVYQFITCIRHEWRE 149
S Y + H E
Sbjct: 110 ATSHYALLQIEDHGLEE 126
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 64.9 bits (151), Expect = 6e-11
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAIS-IHAV 132
C C K + HC+VC C+ DHHCPW+N+CV N + F++F ++ S I+ +
Sbjct: 158 CFTCFIRKMDHTKHCAVCGFCVNNFDHHCPWLNSCVTRRNMREFIMFVISVSVSSAIYCM 217
Query: 133 CLSVYQFITCIRHEWRE 149
S Y + H E
Sbjct: 218 ATSHYALLQIEDHGLEE 234
>U40415-9|AAK39249.3| 281|Caenorhabditis elegans Hypothetical
protein K02G10.1 protein.
Length = 281
Score = 64.5 bits (150), Expect = 9e-11
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIA 125
C C P+R+HHC +C+ C+ + DHHC CVG NQ+YF++F F+ A
Sbjct: 133 CFTCNKEAPQRSHHCPLCKMCVLRKDHHCFITGACVGLGNQRYFMVFLFWCA 184
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 74 CTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVC 133
C C S+ P RAHHC VC CI + DHHC + CVG NQ+YFV + +++ V
Sbjct: 105 CHSCHSMSPLRAHHCPVCDVCILRRDHHCSFGAVCVGHFNQRYFVAAVINLFIMTLPLVS 164
Query: 134 LS 135
S
Sbjct: 165 YS 166
>AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical
protein T22E7.2 protein.
Length = 257
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 78 CSIKPER-AHHCSVCQRCIRKMDHHCPWVNNCVGENNQKYFVLFTFYIAAISIHAVCLSV 136
C ++ R HC C CI DHHC W+NNC+G N + FV+ + S+ LSV
Sbjct: 42 CEVRTYRETKHCKRCNFCIDDFDHHCVWLNNCIGGKNYRPFVVLVICVNVFSMFCFGLSV 101
Query: 137 YQFITCI 143
F + I
Sbjct: 102 VIFFSWI 108
>Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical
protein F33A8.4 protein.
Length = 467
Score = 33.9 bits (74), Expect = 0.14
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 73 KCTKCCSIKPERAHHCSVCQRCIRKMDHHCPWVNNC 108
+C C S++ + +HC C +C++ HC C
Sbjct: 420 RCQACTSVEQGKWNHCEKCDKCVKPRYVHCAQCARC 455
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 35 HNRCCGGKAWCIKGAVPKGNATKEMIKQ 62
++RC G C KG +P GN+ K+ +K+
Sbjct: 1321 NSRCISGICGCAKGELPDGNSCKKEVKK 1348
>Z54282-1|CAA91056.1| 1203|Caenorhabditis elegans Hypothetical
protein F52E10.1 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 2.3
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 86 HHCSVCQRCIRKMDHHCPWVNNCV 109
+HC++C+ + H W+N+C+
Sbjct: 523 YHCAICKIIVYNRSHEEHWINDCI 546
>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
protein protein.
Length = 1203
Score = 29.9 bits (64), Expect = 2.3
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 86 HHCSVCQRCIRKMDHHCPWVNNCV 109
+HC++C+ + H W+N+C+
Sbjct: 523 YHCAICKIIVYNRSHEEHWINDCI 546
>U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein.
Length = 562
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 59 MIKQMSFREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHCPW 104
++ ++ +E VI + S+ + C +C++ D HC W
Sbjct: 474 IVNLLTTKESVVIVSADEIASLPVHNCAQQTSCSKCVQLQDPHCDW 519
>AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical
protein Y54E5B.1a protein.
Length = 712
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 59 MIKQMSFREGQVIFKCTKCCSIKPERAHHCSVCQRCIRKMDHHCPW 104
++ ++ +E VI + S+ + C +C++ D HC W
Sbjct: 471 IVNLLTTKESVVIVSADEIASLPVHNCAQQTSCSKCVQLQDPHCAW 516
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 3 REFYDSSEDDEMESKYQIDSECQVLTRPDKDMHNRCCGGKAWCIKGA 49
R + +E+D ++ ++D+ C TRP + RC GK CI G+
Sbjct: 3850 RRWMCDTENDCGDNSDELDASCGGTTRPCSESEFRCNDGK--CIPGS 3894
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 3 REFYDSSEDDEMESKYQIDSECQVLTRPDKDMHNRCCGGKAWCIKGA 49
R + +E+D ++ ++D+ C TRP + RC GK CI G+
Sbjct: 3850 RRWMCDTENDCGDNSDELDASCGGTTRPCSESEFRCNDGK--CIPGS 3894
>Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical
protein R06C7.4 protein.
Length = 292
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 196 MLLIFCGALLIVVPSMCRPYDPEDKSLKDVLPSSGQFEAFYPRETHGIPNG-SSRPAHGH 254
M +F ALL++ S+ P DP ++ +DV S +F E G +G +S A G
Sbjct: 1 MRFVFIIALLLIGASLAHPADP-IRAKRDVSASEDEFSGDSSGEISGESSGEASGEASGE 59
Query: 255 GS 256
S
Sbjct: 60 AS 61
>DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin
proteoglycan-3 protein.
Length = 292
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 196 MLLIFCGALLIVVPSMCRPYDPEDKSLKDVLPSSGQFEAFYPRETHGIPNG-SSRPAHGH 254
M +F ALL++ S+ P DP ++ +DV S +F E G +G +S A G
Sbjct: 1 MRFVFIIALLLIGASLAHPADP-IRAKRDVSASEDEFSGDSSGEISGESSGEASGEASGE 59
Query: 255 GS 256
S
Sbjct: 60 AS 61
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.325 0.138 0.458
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,764,056
Number of Sequences: 27539
Number of extensions: 335240
Number of successful extensions: 1035
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 38
length of query: 295
length of database: 12,573,161
effective HSP length: 81
effective length of query: 214
effective length of database: 10,342,502
effective search space: 2213295428
effective search space used: 2213295428
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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