Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000554-TA|BGIBMGA000554-
PA|IPR009078|Ferritin/ribonucleotide reductase-like
         (428 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.78 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   4.1  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   5.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   9.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   9.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   9.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   9.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 380 NHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPEKST 423
           +HH    E  G + S  +E  S +VE++    K   P  P  ST
Sbjct: 797 SHHYGRRERSGSESSSISERCSSRVESLTPERKMEPPGVPLNST 840



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 351 WVPDWKDIWVPGVKKIWRPVWISEWFPS 378
           W   W +      K + + VW  + FPS
Sbjct: 362 WQSHWLNKGAEQAKNVLKCVWCKQSFPS 389


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 41  EQQSEKHDQSNQLAEKRVGYDYSAPPSDQFNPFQDNDDLHTHGDHH 86
           E+Q +   Q+ ++  K+     +A   +  N   +N + H H  HH
Sbjct: 284 ERQVKIWFQNRRMKNKKNSQRQAAQQQNNNNAATNNQNHHHHAGHH 329


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 367 WRPVWISEWFPSPNHHEHVHESHGWDRSDNNEASSKKVETIK 408
           W+ VW          + H+++   W   D+ +A S KVE  K
Sbjct: 311 WKVVW-----DDTQKNTHMYKGDQWVAFDSPKAISNKVEYAK 347


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 317 LVWKEAWQQIWKPSKKLIWVPDKKL 341
           LV  E   +IW  ++++ W  D KL
Sbjct: 270 LVLSERQIKIWFQNRRMKWKKDNKL 294


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query: 239 WVKLGIPGEK 248
           WVKLG P EK
Sbjct: 317 WVKLGTPKEK 326



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 238 EWVKLGIPGEKYL 250
           EWVK G P EK +
Sbjct: 745 EWVKQGAPKEKLM 757


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 357 DIWVPGVKKIWRPVWISEWFP 377
           +IW P    I   VWI  W P
Sbjct: 530 NIWNPLTDTIPIHVWIHPWIP 550


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 317 LVWKEAWQQIWKPSKKLIWVPDKKL 341
           LV  E   +IW  ++++ W  D KL
Sbjct: 270 LVLSERQIKIWFQNRRMKWKKDNKL 294


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.135    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,245
Number of Sequences: 317
Number of extensions: 4208
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 9
length of query: 428
length of database: 114,650
effective HSP length: 59
effective length of query: 369
effective length of database: 95,947
effective search space: 35404443
effective search space used: 35404443
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)