GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000554-TA|BGIBMGA000554-
PA|IPR009078|Ferritin/ribonucleotide reductase-like
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    35   0.025
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    30   0.54 
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.72 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    30   0.72 
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    28   2.2  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   2.9  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   2.9  
SPAC664.08c |||traub transciption factor family protein |Schizos...    27   3.8  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    26   8.8  

>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 34.7 bits (76), Expect = 0.025
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 375 WFPSP---NHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPE 420
           W+P P   +H EH    H W+ S ++++S  +    K+ PK    K P+
Sbjct: 46  WYPPPPPRHHKEHKKSHHHWEYSSDDDSSDDEESCEKKKPKCCEKKKPK 94


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 380 NHHEHVHESHGWDRSDNNEASSKKVETIKE-APKHVAPKAP 419
           NH  H H+ H  D S N+ + + +++ I+E    H A + P
Sbjct: 26  NHDHHGHDHHSHDSSSNSSSEAARLQFIQEHGHSHDAMETP 66


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 380 NHHEHVHESHGWDRSDNNEASSKKVETIKEAPKH 413
           N H   HE++G   S+NN A S   ++ K  PK+
Sbjct: 49  NSHSLKHETNGASSSNNNVAKSSSHDSFKAKPKN 82


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 324 QQIWKPSKKLIWVPD-KKLQWKEAWKQIWVPDW---KDIWVPGVKKIWRPVWISEWFPSP 379
           +++ K S KL  VP   + +W   +K++   DW   + IW      +W+ +   +W  +P
Sbjct: 407 KEVLKSSNKLKLVPSLARKEWDSWFKKMG--DWCISRQIWWGHQIPVWKILEEDKWIAAP 464

Query: 380 NHHEHVHESHGWDRSDNNE 398
           N+ + +  S G   S +++
Sbjct: 465 NYEKALQLSVGKSVSQDSD 483


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 380 NHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPEKSTWQFP 427
           +HH H H SH  D S   E     V +  E  +   P   EK   + P
Sbjct: 303 HHHHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPSPSEKKQDRVP 350


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 371 WISEWFPSPNHHEHVHESHGWDRSDNNEASSKK 403
           W +  +P  +HH    E HG DR + N ++S++
Sbjct: 486 WYNSPYPKSSHH--FDERHGGDRHEKNLSNSRR 516


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 374 EWFPSPNHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPEKST 423
           E  PS    + V  +     S     S KK  T+KE PK ++ K   K+T
Sbjct: 282 ESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKTT 331


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 37  NQQIEQQSEKHDQSNQLAEKRVGYDYSAPPSDQFNPFQDND 77
           NQ I QQ E    + +   +R   DYS P +  FNP   ND
Sbjct: 293 NQSIVQQIENSMINKKDLVERTRIDYSDPNNKTFNPEIYND 333


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 175 WKEIKVPDWKKIYKPEWKPIKVPGWKDVKVPDWKKITV 212
           +K  K+  W  +Y  ++ PIK   WK+  V    +I V
Sbjct: 174 YKSEKIGFWDDVYGFDFSPIKKDVWKEPLVDTVDRIAV 211


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.135    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,748
Number of Sequences: 5004
Number of extensions: 75494
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 18
length of query: 428
length of database: 2,362,478
effective HSP length: 75
effective length of query: 353
effective length of database: 1,987,178
effective search space: 701473834
effective search space used: 701473834
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)