Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000554-TA|BGIBMGA000554-
PA|IPR009078|Ferritin/ribonucleotide reductase-like
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0943 - 26191798-26192244,26192802-26192966,26193515-261936... 31 1.3
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 31 1.8
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 31 2.3
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 31 2.3
12_01_0200 - 1483266-1483956,1484023-1484134,1484659-1484957,148... 30 4.1
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 29 5.4
01_05_0490 + 22672241-22674679 29 5.4
12_02_0185 + 15050613-15051320,15055443-15055742 29 9.4
12_02_0010 - 12275652-12276221,12276804-12276935 29 9.4
09_02_0167 + 5221910-5222516,5222826-5224642 29 9.4
>06_03_0943 -
26191798-26192244,26192802-26192966,26193515-26193668,
26194153-26194346,26194494-26194695,26194899-26195103,
26195672-26195843
Length = 512
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 285 QIWIPDKKLVW----KDEWKQIWKTEKKQIWIDDKKLVWKEA---WQQIWKPSKKLIWVP 337
++WI DKK V+ ++WK + + ++ I+ D + K +Q +WK S L
Sbjct: 170 KVWISDKKDVYIGSANNDWKSLSQVKELGIYFADCPQIAKTVEIYFQNLWKLS-TLNSTA 228
Query: 338 DKKLQWKEAWKQI-WVPDWKDIWVP 361
K+ W + W+ VP W P
Sbjct: 229 YTKVAWDKQWQAFRKVPCWSHFLKP 253
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 31.1 bits (67), Expect = 1.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 380 NHHEHVHESHGWDRSD 395
+HHEH HE+H WD +
Sbjct: 308 HHHEHEHENHQWDEEE 323
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 29 SGKALPGKNQQIEQQSEKHDQSNQLAEKRVGYDYSAPPSDQFN 71
S K+ PG N+ E K DQ + A K+V D S PS++ N
Sbjct: 750 SEKSTPGINESSEDHQHKTDQGTETAPKQVSDDLS--PSEKKN 790
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 30.7 bits (66), Expect = 2.3
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 371 WISEWFPSPNHHEHVHESHGWDRSDNNEASSKK--VETIKEAPKHVAP 416
+I EW + +E S G + D ++ASSKK V IKEAP AP
Sbjct: 325 FIGEW----DSNEESSASSGSEEEDGDDASSKKMTVVAIKEAPSLFAP 368
>12_01_0200 -
1483266-1483956,1484023-1484134,1484659-1484957,
1485203-1485265,1485721-1486010
Length = 484
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 195 KVPGWKDVKVPDWKKITVPVYKDIVVPGWKEIQVPAWKKIWVPEWVKLGI 244
++ G + P+W +PV + + V + I + K IW+ EWV GI
Sbjct: 360 RIRGTRGYMAPEWVT-NLPVIEKVDVYSYGVILLELVKGIWISEWVIHGI 408
>06_03_1306 +
29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 29.5 bits (63), Expect = 5.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 184 KKIYKPEWKP--IKVPGWKD-VKVPDWKKITVPVYKDIVVPGWKEIQVPA--WKKIW 235
K I++ +P + +P +KD V V W ++ +P Y+ I+ +EIQ A KK W
Sbjct: 689 KLIFEAGLEPGILHLPSFKDMVDVLAWAQVAIPTYESIMEEQLREIQCHARDLKKHW 745
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.5 bits (63), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 380 NHHEHVHESHGWDRSDNNEASSKKVETIKEA-PKHVAPKAP 419
NHH H H S G S +++AS+ T++ P P+ P
Sbjct: 567 NHHHHHHLSDGHYSSPSSDASASPDSTVRTTNPAPAPPRRP 607
>12_02_0185 + 15050613-15051320,15055443-15055742
Length = 335
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 371 WISEWFPSPNHHEHVHESHGWDRSDNNEASSKKV 404
W+ P P EH H W+ +D++ A +K V
Sbjct: 111 WLQRELPGPCIFEHTHGRSMWEMADDDAAFNKVV 144
>12_02_0010 - 12275652-12276221,12276804-12276935
Length = 233
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 223 WKEIQVPAWKKIWV-PEWVKLGI 244
W I VP W + WV P W LG+
Sbjct: 211 WIRIHVPGWMRRWVKPNWWLLGL 233
>09_02_0167 + 5221910-5222516,5222826-5224642
Length = 807
Score = 28.7 bits (61), Expect = 9.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 315 KKLVWKEAWQQIWK---PSKKLIWVPDKKLQWKE 345
K L WKEAW + PS+K P+ +QW E
Sbjct: 228 KTLQWKEAWNLFSRKAFPSRKENQCPESVVQWAE 261
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.135 0.476
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,550
Number of Sequences: 37544
Number of extensions: 491886
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 14
length of query: 428
length of database: 14,793,348
effective HSP length: 84
effective length of query: 344
effective length of database: 11,639,652
effective search space: 4004040288
effective search space used: 4004040288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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