GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000554-TA|BGIBMGA000554-
PA|IPR009078|Ferritin/ribonucleotide reductase-like
         (428 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical ...    30   2.7  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    30   3.6  
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    30   3.6  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    30   3.6  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   4.8  
Z82259-4|CAB05128.2|  353|Caenorhabditis elegans Hypothetical pr...    29   8.4  
Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical pr...    29   8.4  
U40952-7|AAA81741.1|   52|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical
           protein ZK354.7 protein.
          Length = 224

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 296 KDEWKQIWKTEKKQIWIDDKKLVWKEAWQQIWKPSKKLIWVPDKKLQWKEAWKQ 349
           KDE K+  K EKK+   +DKK   KEA ++  K  KK     +KK + KE  K+
Sbjct: 142 KDEKKEEKKEEKKEEKKEDKKDDKKEAKKEEKKEEKKEEKKEEKKEEKKEEKKE 195



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 290 DKKLVWKDEWKQIWKTEKKQIWIDDKKLVWKEAWQQIWKPSKKLIWVPDKKLQWKE 345
           +KK   K+E K+  K EKK+   DDKK   KE  ++  K  KK     +KK + KE
Sbjct: 140 EKKDEKKEEKKEEKKEEKKEDKKDDKKEAKKEEKKEEKKEEKKEEKKEEKKEEKKE 195


>AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical
           protein F40G9.9 protein.
          Length = 862

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 190 EWKPIKVPGWKDVKVPDWKKITVPVYKDIVVPGWKEIQVPAWKKIWVPEWVKLGIPGEKY 249
           E++  +VPG++  +VP  +   VP ++   VPG++  +V   +   VP +   G  G + 
Sbjct: 481 EFQGSRVPGFQGARVPGIQGFRVPGFQGSRVPGFQGFRVQVSR---VPGFQGPGFQGSRV 537

Query: 250 LGKDHDGWE 258
            G    G++
Sbjct: 538 SGSRFPGFQ 546



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 179 KVPDWKKIYKPEWKPIKVPGWKDVKVPDWKKITVPVYKDIVVPGWKEIQVPAWKKIWVPE 238
           +VP+++    P ++  +VPG++  +VP  +   V V +   VPG++  +VP  +    P 
Sbjct: 409 RVPEFQGFRVPGFQGFRVPGFQGSRVPGIQSFRVQVSR---VPGFQGARVPGIQGSRFP- 464

Query: 239 WVKLGIPGEKYLG 251
               GI G ++ G
Sbjct: 465 ----GIQGARFSG 473


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
           protein E03G2.2 protein.
          Length = 1503

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 292 KLVWKDEW-KQIWKTEKKQIWIDDKK 316
           K  WK EW KQ  K  +KQ+ +DDK+
Sbjct: 239 KARWKTEWLKQTEKAREKQVKLDDKR 264


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 377 PSPNHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPEKSTWQF 426
           P+ +HH     S G DR    E   KK   I E  K   PK P+ S+ ++
Sbjct: 91  PASSHHHGASSSSGKDREKEKE---KKKNKIYEEKKVKTPKPPKSSSSRY 137


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 377 PSPNHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPEKSTWQF 426
           P+ +HH     S G DR    E   KK   I E  K   PK P+ S+ ++
Sbjct: 451 PASSHHHGASSSSGKDREKEKE---KKKNKIYEEKKVKTPKPPKSSSSRY 497


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 377  PSPNHHEHVHESHGWDRSDNNEASSKKVETIKEAP 411
            P P HHEH   SH    + ++ A SK + TI++ P
Sbjct: 1143 PLPLHHEHPLTSHDSSAASSSTAPSKTI-TIRKGP 1176


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 377  PSPNHHEHVHESHGWDRSDNNEASSKKVETIKEAP 411
            P P HHEH   SH    + ++ A SK + TI++ P
Sbjct: 1143 PLPLHHEHPLTSHDSSAASSSTAPSKTI-TIRKGP 1176


>Z82259-4|CAB05128.2|  353|Caenorhabditis elegans Hypothetical
           protein C28D4.4 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 338 DKKLQWKEAWKQIWVPDWKD---IWV---PGVKKIWRPVWISEWFPSPNHHEHVHESHGW 391
           +++L +K     IW   +KD   +W+    G  KI +   +  + P P+H++ +H+ HG+
Sbjct: 63  NQRLNFKRNDIDIWRKSFKDSYSLWLVCLKGTNKIVQMSHVLNFPPLPSHNDILHQYHGF 122


>Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical
           protein T28D6.7 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 181 PDWKKIYKPEWKPIKVP 197
           P+WK+ + P WKP  VP
Sbjct: 259 PEWKEKHHPTWKPWSVP 275


>U40952-7|AAA81741.1|   52|Caenorhabditis elegans Hypothetical
           protein C03B1.10 protein.
          Length = 52

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 340 KLQWKEAWKQIWVPDWKDIWVPG 362
           +L W + W   W+  W D W+ G
Sbjct: 17  RLGWMDGWMDGWMDGWMDGWMDG 39


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.135    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,969,473
Number of Sequences: 27539
Number of extensions: 408892
Number of successful extensions: 957
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 36
length of query: 428
length of database: 12,573,161
effective HSP length: 83
effective length of query: 345
effective length of database: 10,287,424
effective search space: 3549161280
effective search space used: 3549161280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)