GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000554-TA|BGIBMGA000554-
PA|IPR009078|Ferritin/ribonucleotide reductase-like
         (428 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   6.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 379 PNHHEHVHESHGWDRSDNN--EASSKKVETIKEAPK 412
           PN H  V++SHG  RS ++  E  S KV   +E  +
Sbjct: 687 PNTHFQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSR 722


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 296 KDEWKQIWKTEKKQIWIDDKKLVWKEAWQQIWKPSK 331
           K  W + WK E+K    D K L+  EA   I  PS+
Sbjct: 207 KTPWYKGWKVERKDGNADGKTLI--EALDAILPPSR 240



 Score = 22.2 bits (45), Expect = 8.6
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 320 KEAWQQIWKPSKKLIWVPDKKLQWKEAWKQIWVPDWK 356
           KEA Q++ K S K  WV DK    +E    I +  WK
Sbjct: 44  KEA-QEMGKGSFKYAWVLDKLKAERERGITIDIALWK 79


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 38  QQIEQQSEKHDQSNQLAEKRVGYDYSAPPSDQFNP 72
           QQ +QQ ++  Q  Q  +++         +D FNP
Sbjct: 832 QQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNP 866


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 320 KEAWQQIWKPSKKLIWVPDKKLQWKEAWKQIWVPDWK 356
           KEA Q++ K S K  WV DK    +E    I +  WK
Sbjct: 44  KEA-QEMGKGSFKYAWVLDKLKAERERGITIDIALWK 79


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 354 DWKDIW-VPGVKKIWRPVWISEWF-----PSPNHHEHVHESHGWDRSDNNEASSKK 403
           DW  +W VP +     PV+  E       PS +  E   ++H W +  + +++SKK
Sbjct: 386 DW--LWIVPPISGSATPVFHQEMALYYLKPSYDAQEPAWKTHVWKKGRDKKSTSKK 439


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.135    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,550
Number of Sequences: 429
Number of extensions: 5965
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 428
length of database: 140,377
effective HSP length: 60
effective length of query: 368
effective length of database: 114,637
effective search space: 42186416
effective search space used: 42186416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)