GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000554-TA|BGIBMGA000554-
PA|IPR009078|Ferritin/ribonucleotide reductase-like
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ...    31   1.9  
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ...    31   1.9  
At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418    30   2.6  
At3g11160.1 68416.m01353 expressed protein                             30   3.4  
At1g23880.1 68414.m03012 NHL repeat-containing protein contains ...    30   3.4  
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family...    29   4.5  
At1g31410.1 68414.m03847 putrescine-binding periplasmic protein-...    29   4.5  

>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 364 KKIWRPVWISEWFPSPNHHEHVHESHGWD 392
           K+ W   WI E F +PN +E    +HG+D
Sbjct: 420 KEKWIEYWICEGFINPNRYEDGGTNHGYD 448


>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 364 KKIWRPVWISEWFPSPNHHEHVHESHGWD 392
           K+ W   WI E F +PN +E    +HG+D
Sbjct: 420 KEKWIEYWICEGFINPNRYEDGGTNHGYD 448


>At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418
          Length = 896

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 287 WIPDKKLVWKDEWKQIWKTEKKQIWIDDKKLVWKEAWQQIWKPSKKLIWV 336
           + PD++L+  DE  Q W +E + I   DKK    E W  + K    LI V
Sbjct: 688 YYPDEELITSDEELQGWWSEVRNIGHGDKK---DEPWWPVLKTQDDLIGV 734


>At3g11160.1 68416.m01353 expressed protein
          Length = 145

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 307 KKQIWIDDKKLVWKEAWQQIWKPSKKLIWVPDKKLQWK-EAWKQIWVPDWKDIWVPGV-- 363
           +K++W + K   W     ++W  S     +  K L+ + + W+ + V    D+W   +  
Sbjct: 71  RKKMWPELKDKEWFRITSRMWSESD----IRKKMLRMRSDLWESMGVSRSSDLWEEKMWD 126

Query: 364 ---KKIWRPVWISEW 375
              KK+W  +W S W
Sbjct: 127 YLTKKMWYDLWKSMW 141


>At1g23880.1 68414.m03012 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 545

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 41  EQQSEKHDQSNQLAEKRVGYDYSAPPSDQ-----FNPFQDNDDLHTHGDHH 86
           EQQ EKH Q +      + Y      S++     F P Q+ D ++TH + H
Sbjct: 480 EQQQEKHQQYHHRHHSTIPYTLYEQSSEKTNEIVFGPGQEQDQMNTHQNIH 530


>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 370

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 179 KVPDWKKIYKPEWKPI-KVPGWKDVKVPDWKKITVPVYKDIVVPGWKEI-QVPAWKKIWV 236
           ++P   +I KPE   + ++P  ++ K+PD  K+ +P + +I  P   ++ ++P  +   V
Sbjct: 77  ELPKIPEIPKPELPKVPEIPKPEETKLPDIPKLELPKFPEIPKPELPKMPEIPKPELPKV 136

Query: 237 PEWVKLGIP 245
           PE  K  +P
Sbjct: 137 PEIQKPELP 145


>At1g31410.1 68414.m03847 putrescine-binding periplasmic
           protein-related similar to Chain A, Putrescine Receptor
           (Potf) (GI:3891734) [Escherichia coli]; similar to Chain
           C, Putrescine Receptor (Potf) (GI:3891736) [Escherichia
           coli]; similar to Putrescine-binding periplasmic protein
           precursor. (Swiss-Prot:P31133) [Escherichia coli]
          Length = 524

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 176 KEIKVPDWKKIYKPEWKPIKVPGWKDVKVPDWKKITVPVYKDIVVPGWKEIQVPAWKKIW 235
           K I+  DW K    +WK      +   K PD +   VP     +V  +K+ +   +K   
Sbjct: 201 KGIEDQDWYKGLSDKWKIYLRRNYAGEKAPDGETWAVPYRWGTMVIAYKKSKFQNYKLAP 260

Query: 236 VPEWVKLGIP 245
           + +W  L  P
Sbjct: 261 IEDWADLWRP 270


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.135    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,943,998
Number of Sequences: 28952
Number of extensions: 413756
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 22
length of query: 428
length of database: 12,070,560
effective HSP length: 83
effective length of query: 345
effective length of database: 9,667,544
effective search space: 3335302680
effective search space used: 3335302680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)