Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000552-TA|BGIBMGA000552-PA|IPR010987|Glutathione
S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold
         (326 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    23   2.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.0  

>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 79  ADSTFIIKDLSEKYNKDLDAGLTSEQRVISH 109
           A +  + ++ + +YN +LDA L SE+ + S+
Sbjct: 11  ACTNVLSEEYTNQYNDELDAALKSERLMKSY 41


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 190 NDLRVLSDLLNDRPFFFGDEPTLLDVVAFSNL 221
           +D R+L++LL+ +P+     PT  D +  + +
Sbjct: 407 SDNRILNNLLDKKPYSTYKFPTNFDALIVNEM 438


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 190 NDLRVLSDLLNDRPFFFGDEPTLLDVVAFSNL 221
           +D R+L++LL+ +P+     PT  D +  + +
Sbjct: 299 SDNRILNNLLDKKPYSTYKFPTNFDALIVNEM 330


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,728
Number of Sequences: 317
Number of extensions: 2726
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 326
length of database: 114,650
effective HSP length: 57
effective length of query: 269
effective length of database: 96,581
effective search space: 25980289
effective search space used: 25980289
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)