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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000552-TA|BGIBMGA000552-PA|IPR010987|Glutathione
S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        39   0.001
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       29   0.90 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    29   1.2  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   3.6  
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    27   4.8  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    26   6.3  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    26   6.3  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.3  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    26   8.4  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    26   8.4  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    26   8.4  

>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 19/76 (25%), Positives = 39/76 (51%)

Query: 195 LSDLLNDRPFFFGDEPTLLDVVAFSNLAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIK 254
           L  L++D  F FG++PT LD + ++ L+   F ++  +  LR  +  + P L   +  ++
Sbjct: 203 LESLISDSKFIFGEKPTSLDCLFYAYLSFHAFTNELPQATLRPCLQFNSPKLYAYLKSLR 262

Query: 255 DRAYQDWDEICTTLDL 270
           +  + D   I + L +
Sbjct: 263 ETWFSDDSNILSPLSI 278


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 182 DEIIEFGKNDLRVLSDLLNDRPFFFGDE-PTLLDVVAFSNLAQLQFIDKEVEHPLRDAMN 240
           D I+E        LS+LL    +FF +E P+ LDV  F++   +  +   +++     + 
Sbjct: 186 DAILEDASKAFSALSELLGSDKWFFNNESPSFLDVSLFAHAEIINHL--PLKNDQLKVVL 243

Query: 241 DSFPNLVGLVSRIKDRA 257
            +  NL  L +R++  A
Sbjct: 244 GTHKNLTDLTTRVRTLA 260


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 207 GDEPTL---LDVVAFSNLAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIKDRAYQDWDE 263
           G  P L   L+V A   L +   + +E   P++D  N  +   V  + RIKD  + D+++
Sbjct: 865 GSSPPLGEGLNVPAIITLEKTWPLSRETREPIKDPQNPRYIQHVKRLHRIKDTEFIDFND 924


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 37  PPPLFTFNGYFLYKRFTNVEHHAKYRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDL 96
           PP  FT       +    V+  + Y   + +   VE+NG+ + DS      LSE Y  + 
Sbjct: 374 PPSSFTQKSSAKEEESDKVKGESVYPKPESESYDVEMNGKSLEDS----DSLSELYLTNE 429

Query: 97  DAGLTSEQRVISHAMISMIENHLS 120
           +  + S  +   +  I +IE+ LS
Sbjct: 430 EKKMASIIKDSVNVQIKLIESKLS 453


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 255 DRAYQDWDEICTTLDLNAHVPKPKEAK 281
           + A  +WD+    +D+  HVPK   AK
Sbjct: 7   EEAEYEWDQTIADVDIVIHVPKGTRAK 33


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 192 LRVLSDLLNDRPFFFGDEPTLLDVVAF 218
           L+ L+D L D+ F  G EP+  D V F
Sbjct: 12  LKQLNDFLLDKSFIEGYEPSQADAVVF 38


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 106 VISHAMISMIENHLSWVILWWRAKYPDSVI---KGYQVNLQSALNTRLPNPILNFCYKFT 162
           VIS A I  I + ++ VIL   A   +  +    G Q+  Q+A +   P  + +  YK +
Sbjct: 258 VISDATIFAIMSRVNKVILGTHAILGNGGLVTYSGAQLVAQAARHHATPVVVCSGIYKLS 317

Query: 163 SARKGMKKARAHGIGVHSQDEIIEFGKNDLRVLSDLLNDRPFFFGDEPTLLDV 215
                  ++    I + S D+I+ F + DL   +++LN  P++    P L+D+
Sbjct: 318 PVYPYDLESI---IQLSSPDKIMSFNEGDLISRAEILN--PYYDYIPPDLVDL 365


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 11/68 (16%)

Query: 214 DVVAFSNLAQLQFIDKEVE------HPLRDA----MNDSFPNLVGLVSRIKDRAY-QDWD 262
           D+ ++ N+  L F D  +E      H + ++    +ND+FP+LV  V ++  + +    +
Sbjct: 245 DLKSYMNIKGLAFCDSLIEARPNTIHGVTESYFSSLNDTFPSLVSTVVKMSSKLHVPSTE 304

Query: 263 EICTTLDL 270
            ICT  +L
Sbjct: 305 AICTICNL 312


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 205 FFGDEPTLLDVVAFSN-LAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIKDRAYQDWDE 263
           F G E   + V  FSN L       +  E     +  D F N+  L+S  +    + WD+
Sbjct: 118 FLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQ 177

Query: 264 ICTTLD 269
              T+D
Sbjct: 178 TKGTVD 183


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 144 SALNTRLPNPILNFCYKFTSARKGMKKARA 173
           S+L+ +LP P +N  Y F  +R  M   RA
Sbjct: 76  SSLDNKLPIPFMNQTYAFLESRLDMSIHRA 105


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 190 NDLRVLSDLLNDRPFFFGDEPTLLDVVAFSNLAQLQF 226
           + L++ ++L+ DR +  GD  TL D+  F +L ++ F
Sbjct: 140 DSLKIPNELVKDRTYLVGDRFTLADLF-FGSLLRIFF 175


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,518
Number of Sequences: 5004
Number of extensions: 60113
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 11
length of query: 326
length of database: 2,362,478
effective HSP length: 73
effective length of query: 253
effective length of database: 1,997,186
effective search space: 505288058
effective search space used: 505288058
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)

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