Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000552-TA|BGIBMGA000552-PA|IPR010987|Glutathione
S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 39 0.001
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 29 0.90
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 29 1.2
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 3.6
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 27 4.8
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 26 6.3
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 26 6.3
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.3
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 26 8.4
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 26 8.4
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 26 8.4
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 195 LSDLLNDRPFFFGDEPTLLDVVAFSNLAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIK 254
L L++D F FG++PT LD + ++ L+ F ++ + LR + + P L + ++
Sbjct: 203 LESLISDSKFIFGEKPTSLDCLFYAYLSFHAFTNELPQATLRPCLQFNSPKLYAYLKSLR 262
Query: 255 DRAYQDWDEICTTLDL 270
+ + D I + L +
Sbjct: 263 ETWFSDDSNILSPLSI 278
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 29.1 bits (62), Expect = 0.90
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 182 DEIIEFGKNDLRVLSDLLNDRPFFFGDE-PTLLDVVAFSNLAQLQFIDKEVEHPLRDAMN 240
D I+E LS+LL +FF +E P+ LDV F++ + + +++ +
Sbjct: 186 DAILEDASKAFSALSELLGSDKWFFNNESPSFLDVSLFAHAEIINHL--PLKNDQLKVVL 243
Query: 241 DSFPNLVGLVSRIKDRA 257
+ NL L +R++ A
Sbjct: 244 GTHKNLTDLTTRVRTLA 260
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 207 GDEPTL---LDVVAFSNLAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIKDRAYQDWDE 263
G P L L+V A L + + +E P++D N + V + RIKD + D+++
Sbjct: 865 GSSPPLGEGLNVPAIITLEKTWPLSRETREPIKDPQNPRYIQHVKRLHRIKDTEFIDFND 924
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 3.6
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 37 PPPLFTFNGYFLYKRFTNVEHHAKYRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDL 96
PP FT + V+ + Y + + VE+NG+ + DS LSE Y +
Sbjct: 374 PPSSFTQKSSAKEEESDKVKGESVYPKPESESYDVEMNGKSLEDS----DSLSELYLTNE 429
Query: 97 DAGLTSEQRVISHAMISMIENHLS 120
+ + S + + I +IE+ LS
Sbjct: 430 EKKMASIIKDSVNVQIKLIESKLS 453
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 255 DRAYQDWDEICTTLDLNAHVPKPKEAK 281
+ A +WD+ +D+ HVPK AK
Sbjct: 7 EEAEYEWDQTIADVDIVIHVPKGTRAK 33
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 192 LRVLSDLLNDRPFFFGDEPTLLDVVAF 218
L+ L+D L D+ F G EP+ D V F
Sbjct: 12 LKQLNDFLLDKSFIEGYEPSQADAVVF 38
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 6.3
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 106 VISHAMISMIENHLSWVILWWRAKYPDSVI---KGYQVNLQSALNTRLPNPILNFCYKFT 162
VIS A I I + ++ VIL A + + G Q+ Q+A + P + + YK +
Sbjct: 258 VISDATIFAIMSRVNKVILGTHAILGNGGLVTYSGAQLVAQAARHHATPVVVCSGIYKLS 317
Query: 163 SARKGMKKARAHGIGVHSQDEIIEFGKNDLRVLSDLLNDRPFFFGDEPTLLDV 215
++ I + S D+I+ F + DL +++LN P++ P L+D+
Sbjct: 318 PVYPYDLESI---IQLSSPDKIMSFNEGDLISRAEILN--PYYDYIPPDLVDL 365
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 214 DVVAFSNLAQLQFIDKEVE------HPLRDA----MNDSFPNLVGLVSRIKDRAY-QDWD 262
D+ ++ N+ L F D +E H + ++ +ND+FP+LV V ++ + + +
Sbjct: 245 DLKSYMNIKGLAFCDSLIEARPNTIHGVTESYFSSLNDTFPSLVSTVVKMSSKLHVPSTE 304
Query: 263 EICTTLDL 270
ICT +L
Sbjct: 305 AICTICNL 312
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 205 FFGDEPTLLDVVAFSN-LAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIKDRAYQDWDE 263
F G E + V FSN L + E + D F N+ L+S + + WD+
Sbjct: 118 FLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQ 177
Query: 264 ICTTLD 269
T+D
Sbjct: 178 TKGTVD 183
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 144 SALNTRLPNPILNFCYKFTSARKGMKKARA 173
S+L+ +LP P +N Y F +R M RA
Sbjct: 76 SSLDNKLPIPFMNQTYAFLESRLDMSIHRA 105
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 190 NDLRVLSDLLNDRPFFFGDEPTLLDVVAFSNLAQLQF 226
+ L++ ++L+ DR + GD TL D+ F +L ++ F
Sbjct: 140 DSLKIPNELVKDRTYLVGDRFTLADLF-FGSLLRIFF 175
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.138 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,518
Number of Sequences: 5004
Number of extensions: 60113
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 11
length of query: 326
length of database: 2,362,478
effective HSP length: 73
effective length of query: 253
effective length of database: 1,997,186
effective search space: 505288058
effective search space used: 505288058
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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