BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000552-TA|BGIBMGA000552-PA|IPR010987|Glutathione S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold (326 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 39 0.001 SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 29 0.90 SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 29 1.2 SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 3.6 SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 27 4.8 SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 26 6.3 SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 26 6.3 SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.3 SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 26 8.4 SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 26 8.4 SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 26 8.4 >SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual Length = 450 Score = 38.7 bits (86), Expect = 0.001 Identities = 19/76 (25%), Positives = 39/76 (51%) Query: 195 LSDLLNDRPFFFGDEPTLLDVVAFSNLAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIK 254 L L++D F FG++PT LD + ++ L+ F ++ + LR + + P L + ++ Sbjct: 203 LESLISDSKFIFGEKPTSLDCLFYAYLSFHAFTNELPQATLRPCLQFNSPKLYAYLKSLR 262 Query: 255 DRAYQDWDEICTTLDL 270 + + D I + L + Sbjct: 263 ETWFSDDSNILSPLSI 278 >SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 271 Score = 29.1 bits (62), Expect = 0.90 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 182 DEIIEFGKNDLRVLSDLLNDRPFFFGDE-PTLLDVVAFSNLAQLQFIDKEVEHPLRDAMN 240 D I+E LS+LL +FF +E P+ LDV F++ + + +++ + Sbjct: 186 DAILEDASKAFSALSELLGSDKWFFNNESPSFLDVSLFAHAEIINHL--PLKNDQLKVVL 243 Query: 241 DSFPNLVGLVSRIKDRA 257 + NL L +R++ A Sbjct: 244 GTHKNLTDLTTRVRTLA 260 >SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr 1|||Manual Length = 1778 Score = 28.7 bits (61), Expect = 1.2 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 207 GDEPTL---LDVVAFSNLAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIKDRAYQDWDE 263 G P L L+V A L + + +E P++D N + V + RIKD + D+++ Sbjct: 865 GSSPPLGEGLNVPAIITLEKTWPLSRETREPIKDPQNPRYIQHVKRLHRIKDTEFIDFND 924 >SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 27.1 bits (57), Expect = 3.6 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 37 PPPLFTFNGYFLYKRFTNVEHHAKYRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDL 96 PP FT + V+ + Y + + VE+NG+ + DS LSE Y + Sbjct: 374 PPSSFTQKSSAKEEESDKVKGESVYPKPESESYDVEMNGKSLEDS----DSLSELYLTNE 429 Query: 97 DAGLTSEQRVISHAMISMIENHLS 120 + + S + + I +IE+ LS Sbjct: 430 EKKMASIIKDSVNVQIKLIESKLS 453 >SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 26.6 bits (56), Expect = 4.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 255 DRAYQDWDEICTTLDLNAHVPKPKEAK 281 + A +WD+ +D+ HVPK AK Sbjct: 7 EEAEYEWDQTIADVDIVIHVPKGTRAK 33 >SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 214 Score = 26.2 bits (55), Expect = 6.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 192 LRVLSDLLNDRPFFFGDEPTLLDVVAF 218 L+ L+D L D+ F G EP+ D V F Sbjct: 12 LKQLNDFLLDKSFIEGYEPSQADAVVF 38 >SPAC343.14c |||translation initiation factor eIF2B|Schizosaccharomyces pombe|chr 1|||Manual Length = 393 Score = 26.2 bits (55), Expect = 6.3 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 8/113 (7%) Query: 106 VISHAMISMIENHLSWVILWWRAKYPDSVI---KGYQVNLQSALNTRLPNPILNFCYKFT 162 VIS A I I + ++ VIL A + + G Q+ Q+A + P + + YK + Sbjct: 258 VISDATIFAIMSRVNKVILGTHAILGNGGLVTYSGAQLVAQAARHHATPVVVCSGIYKLS 317 Query: 163 SARKGMKKARAHGIGVHSQDEIIEFGKNDLRVLSDLLNDRPFFFGDEPTLLDV 215 ++ I + S D+I+ F + DL +++LN P++ P L+D+ Sbjct: 318 PVYPYDLESI---IQLSSPDKIMSFNEGDLISRAEILN--PYYDYIPPDLVDL 365 >SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 366 Score = 26.2 bits (55), Expect = 6.3 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 11/68 (16%) Query: 214 DVVAFSNLAQLQFIDKEVE------HPLRDA----MNDSFPNLVGLVSRIKDRAY-QDWD 262 D+ ++ N+ L F D +E H + ++ +ND+FP+LV V ++ + + + Sbjct: 245 DLKSYMNIKGLAFCDSLIEARPNTIHGVTESYFSSLNDTFPSLVSTVVKMSSKLHVPSTE 304 Query: 263 EICTTLDL 270 ICT +L Sbjct: 305 AICTICNL 312 >SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces pombe|chr 2|||Manual Length = 351 Score = 25.8 bits (54), Expect = 8.4 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 205 FFGDEPTLLDVVAFSN-LAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSRIKDRAYQDWDE 263 F G E + V FSN L + E + D F N+ L+S + + WD+ Sbjct: 118 FLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQ 177 Query: 264 ICTTLD 269 T+D Sbjct: 178 TKGTVD 183 >SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|Schizosaccharomyces pombe|chr 2|||Manual Length = 327 Score = 25.8 bits (54), Expect = 8.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 144 SALNTRLPNPILNFCYKFTSARKGMKKARA 173 S+L+ +LP P +N Y F +R M RA Sbjct: 76 SSLDNKLPIPFMNQTYAFLESRLDMSIHRA 105 >SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 220 Score = 25.8 bits (54), Expect = 8.4 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Query: 190 NDLRVLSDLLNDRPFFFGDEPTLLDVVAFSNLAQLQF 226 + L++ ++L+ DR + GD TL D+ F +L ++ F Sbjct: 140 DSLKIPNELVKDRTYLVGDRFTLADLF-FGSLLRIFF 175 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.320 0.138 0.417 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,386,518 Number of Sequences: 5004 Number of extensions: 60113 Number of successful extensions: 143 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 138 Number of HSP's gapped (non-prelim): 11 length of query: 326 length of database: 2,362,478 effective HSP length: 73 effective length of query: 253 effective length of database: 1,997,186 effective search space: 505288058 effective search space used: 505288058 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 54 (25.8 bits)
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