GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000552-TA|BGIBMGA000552-PA|IPR010987|Glutathione
S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286...    31   1.7  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    30   2.2  
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    30   2.9  
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709           29   3.9  
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690...    29   6.7  
01_07_0181 + 41836417-41836644,41837166-41837549                       29   6.7  
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    28   8.9  

>05_01_0366 -
           2867953-2868252,2868329-2868469,2868808-2869089,
           2869177-2869569,2869796-2869975,2870149-2871510
          Length = 885

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 49  YKRFTNVEHHAKYRSKKGQLPFVELNGE-EIADSTFIIKDLSEKYNKDLD 97
           +K  T +++H KY ++ G +P++ L GE EI+     +K+L+    +++D
Sbjct: 822 FKLTTRIQNHLKYATQSG-IPWMVLVGESEISSGKVKLKNLAASQEEEVD 870


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 248 GLVSRIKDRAYQDWDEICTTLDLNAHV 274
           G+++R+K++ Y +W ++C  LD    +
Sbjct: 456 GMLARMKNKTYAEWQKVCDRLDCGLEI 482


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 104 QRVISHAMISMIENHLSWVILWWRAKYPDSVIK 136
           +++++H M+S  EN + W+ + W  K PD  +K
Sbjct: 843 KKLLTHKMLSFQENRVQWMQVLW-GKEPDPTLK 874


>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
          Length = 191

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 190 NDLRVLSDLLNDRPFFFGDEPTLLDVV 216
           + LR L  +L DR FF GDE   LD+V
Sbjct: 118 DQLRRLEGVLGDRSFFSGDEFGFLDIV 144


>06_01_0897 -
           6903294-6903401,6903781-6903855,6904239-6904379,
           6904496-6904646,6905035-6905178,6905276-6905366,
           6906071-6906308
          Length = 315

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 63  SKKGQLPFVELNGEEIADSTFIIKDLSEKY 92
           S +G++P V+L  + +ADS  I + + EKY
Sbjct: 115 SPEGKVPIVKLEEQWVADSDVITQAIEEKY 144


>01_07_0181 + 41836417-41836644,41837166-41837549
          Length = 203

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 181 QDEIIEFGKNDLRVLSDLLNDRPFFFGDEPTLLDVVAFSNLAQLQFIDKEV 231
           Q+ +++  K +L +L   L+ + FF GD    LD+VA S LA    + +EV
Sbjct: 92  QEGLLKETKENLALLEAQLHGKRFFAGDSVGYLDIVA-SGLAHWISVVEEV 141


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 104 QRVISHAMISMIENHLSWVILWWRAKYPDSVIKGYQVN 141
           +++++H M+S   N + W+ + W  K PD  +K   ++
Sbjct: 750 KKLLTHKMLSFQGNRVQWMQVLW-GKEPDPTLKNQHIS 786


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,477,701
Number of Sequences: 37544
Number of extensions: 344746
Number of successful extensions: 670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 7
length of query: 326
length of database: 14,793,348
effective HSP length: 82
effective length of query: 244
effective length of database: 11,714,740
effective search space: 2858396560
effective search space used: 2858396560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)