Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000552-TA|BGIBMGA000552-PA|IPR010987|Glutathione
S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold
(326 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75270.1 68414.m08744 dehydroascorbate reductase, putative si... 32 0.60
At5g28885.1 68418.m03555 hypothetical protein 30 1.8
At5g42150.1 68418.m05131 expressed protein 29 3.2
At5g62500.1 68418.m07844 microtubule-associated EB1 family prote... 29 5.6
At4g19160.3 68417.m02827 expressed protein 28 7.4
At4g19160.2 68417.m02826 expressed protein 28 7.4
At4g19160.1 68417.m02828 expressed protein 28 7.4
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 28 7.4
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 28 9.8
At1g22260.1 68414.m02782 expressed protein 28 9.8
At1g10360.1 68414.m01167 glutathione S-transferase, putative sim... 28 9.8
>At1g75270.1 68414.m08744 dehydroascorbate reductase, putative
similar to GI:6939839 from [Oryza sativa]
Length = 213
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 63 SKKGQLPFVELNGEEIADSTFIIKDLSEKY 92
S +G++P V+L+G+ +ADS I+ L EKY
Sbjct: 55 SPEGKVPVVKLDGKWVADSDVIVGLLEEKY 84
>At5g28885.1 68418.m03555 hypothetical protein
Length = 184
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 70 FVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISM 114
F++++GE I S I+KD S+ +K LD L + I + M
Sbjct: 94 FIDVSGEIIGMSEIIVKDCSDNMSKLLDIQLRDLSQTIPECTLRM 138
>At5g42150.1 68418.m05131 expressed protein
Length = 315
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 197 DLLNDRPFFFGDEPTLLDVVAFSNLAQLQFI--DKE-VEHPLRDAMNDSFPNLVGLVSRI 253
D L +RP+ G +P L D+ F L ++++ K+ V++ N VG SRI
Sbjct: 254 DALKERPYLGGSKPNLGDLAVFGVLRPIRYLRSGKDMVDNTRIGEWYSRMENTVGEPSRI 313
Query: 254 KD 255
K+
Sbjct: 314 KE 315
>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein
similar to EBF3-S (Microtubule-associated protein) [Homo
sapiens] GI:12751131; contains Pfam profiles PF00307:
Calponin homology (CH) domain, PF03271: EB1 protein
Length = 293
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 167 GMKKARAHGI--GVHSQDEIIEFGK--NDLRVLSDLL-NDRPFFF 206
G K+A++HGI G +S E+ K DL+V DLL +R F+F
Sbjct: 169 GPKQAKSHGIGGGSNSSAEVQALSKEVEDLKVSVDLLEKERDFYF 213
>At4g19160.3 68417.m02827 expressed protein
Length = 454
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 61 YRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENH 118
+++ GQ F +NG + D + DL+ K +DLD + + + +I A+ ++I H
Sbjct: 279 FKATSGQSLFSIVNGRCVDDPGSMASDLTAKSLQDLD--MATNRDIIGIALANLIRLH 334
>At4g19160.2 68417.m02826 expressed protein
Length = 453
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 61 YRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENH 118
+++ GQ F +NG + D + DL+ K +DLD + + + +I A+ ++I H
Sbjct: 279 FKATSGQSLFSIVNGRCVDDPGSMASDLTAKSLQDLD--MATNRDIIGIALANLIRLH 334
>At4g19160.1 68417.m02828 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 61 YRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENH 118
+++ GQ F +NG + D + DL+ K +DLD + + + +I A+ ++I H
Sbjct: 138 FKATSGQSLFSIVNGRCVDDPGSMASDLTAKSLQDLD--MATNRDIIGIALANLIRLH 193
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 59 AKYRSKKGQL-PFVELNGEEIADSTFIIKDLSEKY---NKDLD 97
A+Y SK G+L F ++ EEI + + ++ DL+ K N+DL+
Sbjct: 229 AEYLSKVGKLRSFSDITKEEIQNKSIVVDDLANKIAMTNEDLN 271
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 71 VELNGEEIADSTFIIKDLSEKYNKDLDAGLT 101
+ELN E + D + D++EK N + D LT
Sbjct: 1214 IELNREMMVDKKLSMADIAEKINLEFDDDLT 1244
>At1g22260.1 68414.m02782 expressed protein
Length = 857
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 84 IIKDLSEKYNKDL-DAGLTSEQRVI------SHAMISMIENHLSWVILWWRAKYPDSVIK 136
IIKDLS K++K+L D S+++++ S ++S+ E H S L +AKY D ++
Sbjct: 588 IIKDLSNKFDKELSDCKEESKRQLLTIQEEHSSLILSLREEHES-KELNLKAKY-DQELR 645
Query: 137 GYQVNLQSALNTRL 150
Q+ ++ L R+
Sbjct: 646 QSQIQAENELKERI 659
>At1g10360.1 68414.m01167 glutathione S-transferase, putative
similar to glutathione S-transferase
(sp|Q03666|GTX4_TOBAC); similar to EST gb|H36275
gb:AB039930.
Length = 227
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 193 RVLSDLLNDRPFFFGDEPTLLDVVAFSNLAQLQFIDKEVEHPLRDAMNDSFPNLVGLVSR 252
+ +D +PFF GD LD+ S L + ++ + H D P+LV R
Sbjct: 140 KAFNDCSQGKPFFNGDHIGYLDIALGSFLGWWRVVELDANHKFLD--ETKTPSLVKWAER 197
Query: 253 IKD 255
D
Sbjct: 198 FCD 200
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.138 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,019,167
Number of Sequences: 28952
Number of extensions: 296912
Number of successful extensions: 596
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 13
length of query: 326
length of database: 12,070,560
effective HSP length: 81
effective length of query: 245
effective length of database: 9,725,448
effective search space: 2382734760
effective search space used: 2382734760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -