Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000551-TA|BGIBMGA000551-PA|IPR012336|Thioredoxin-like
fold
         (121 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   6.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 14 PEKEKDMKEDAPADNGQSK 32
          P++E D K+D  +DN   K
Sbjct: 81 PKEETDDKDDDESDNENIK 99


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 2   TVEVTNNIPENAPEKEKDMKEDAPADNG 29
           +V +  N+PE    K  D+ E+   +NG
Sbjct: 217 SVPIFKNLPEETLIKISDVLEETFYNNG 244


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 76  RTPLLPSTSPYCLKV 90
           R P+LP    YC+ V
Sbjct: 784 RIPILPMIPVYCVPV 798


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,736
Number of Sequences: 429
Number of extensions: 1059
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 121
length of database: 140,377
effective HSP length: 51
effective length of query: 70
effective length of database: 118,498
effective search space:  8294860
effective search space used:  8294860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)